ID TRI35_HUMAN Reviewed; 493 AA. AC Q9UPQ4; Q86XQ0; Q8WVA4; DT 07-DEC-2004, integrated into UniProtKB/Swiss-Prot. DT 07-DEC-2004, sequence version 2. DT 24-JAN-2024, entry version 181. DE RecName: Full=E3 ubiquitin-protein ligase TRIM35 {ECO:0000303|PubMed:32562145}; DE EC=2.3.2.27; DE AltName: Full=Hemopoietic lineage switch protein 5; GN Name=TRIM35; Synonyms=HLS5, KIAA1098; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC TISSUE=Liver; RX PubMed=14662771; DOI=10.1074/jbc.m306751200; RA Lalonde J.-P., Lim R., Ingley E., Tilbrook P.A., Thompson M.J., RA McCulloch R., Beaumont J.G., Wicking C., Eyre H.J., Sutherland G.R., RA Howe K., Solomon E., Williams J.H., Klinken S.P.; RT "HLS5, a novel RBCC (ring finger, B box, coiled-coil) family member RT isolated from a hemopoietic lineage switch, is a candidate tumor RT suppressor."; RL J. Biol. Chem. 279:8181-8189(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Brain; RX PubMed=10470851; DOI=10.1093/dnares/6.3.197; RA Kikuno R., Nagase T., Ishikawa K., Hirosawa M., Miyajima N., Tanaka A., RA Kotani H., Nomura N., Ohara O.; RT "Prediction of the coding sequences of unidentified human genes. XIV. The RT complete sequences of 100 new cDNA clones from brain which code for large RT proteins in vitro."; RL DNA Res. 6:197-205(1999). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC TISSUE=Brain, and Lung; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, PHOSPHORYLATION [LARGE SCALE RP ANALYSIS] AT SER-4 AND SER-8, AND IDENTIFICATION BY MASS SPECTROMETRY RP [LARGE SCALE ANALYSIS]. RX PubMed=21406692; DOI=10.1126/scisignal.2001570; RA Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., RA Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.; RT "System-wide temporal characterization of the proteome and phosphoproteome RT of human embryonic stem cell differentiation."; RL Sci. Signal. 4:RS3-RS3(2011). RN [5] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-4, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [6] RP FUNCTION, INTERACTION WITH PKM, AND SUBCELLULAR LOCATION. RX PubMed=25263439; DOI=10.1038/onc.2014.325; RA Chen Z., Wang Z., Guo W., Zhang Z., Zhao F., Zhao Y., Jia D., Ding J., RA Wang H., Yao M., He X.; RT "TRIM35 Interacts with pyruvate kinase isoform M2 to suppress the Warburg RT effect and tumorigenicity in hepatocellular carcinoma."; RL Oncogene 34:3946-3956(2015). RN [7] RP FUNCTION, INDUCTION BY TLR5 AND TLR7, AND INTERACTION WITH IRF7. RX PubMed=25907537; DOI=10.1016/j.febslet.2015.04.019; RA Wang Y., Yan S., Yang B., Wang Y., Zhou H., Lian Q., Sun B.; RT "TRIM35 negatively regulates TLR7- and TLR9-mediated type I interferon RT production by targeting IRF7."; RL FEBS Lett. 589:1322-1330(2015). RN [8] RP FUNCTION, AND INTERACTION WITH TRAF3. RX PubMed=32562145; DOI=10.1007/s13238-020-00734-6; RA Sun N., Jiang L., Ye M., Wang Y., Wang G., Wan X., Zhao Y., Wen X., RA Liang L., Ma S., Liu L., Bu Z., Chen H., Li C.; RT "TRIM35 mediates protection against influenza infection by activating TRAF3 RT and degrading viral PB2."; RL Protein Cell 11:894-914(2020). CC -!- FUNCTION: E3 ubiquitin-protein ligase that participates in multiple CC biological processes including cell death, glucose metabolism, and in CC particular, the innate immune response. Mediates 'Lys-63'-linked CC polyubiquitination of TRAF3 thereby promoting type I interferon CC production via RIG-I signaling pathway (PubMed:32562145). Can also CC catalyze 'Lys-48'-linked polyubiquitination and proteasomal degradation CC of viral proteins such as influenza virus PB2 (PubMed:32562145). Acts CC as a negative feedback regulator of TLR7- and TLR9-triggered signaling. CC Mechanistically, promotes the 'Lys-48'-linked ubiquitination of IRF7 CC and induces its degradation via a proteasome-dependent pathway CC (PubMed:25907537). Reduces FGFR1-dependent tyrosine phosphorylation of CC PKM, inhibiting PKM-dependent lactate production, glucose metabolism, CC and cell growth (PubMed:25263439). {ECO:0000269|PubMed:25263439, CC ECO:0000269|PubMed:25907537, ECO:0000269|PubMed:32562145}. CC -!- CATALYTIC ACTIVITY: CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L- CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.; CC EC=2.3.2.27; CC -!- PATHWAY: Protein modification; protein ubiquitination. CC -!- SUBUNIT: Interacts with PKM isoform M2, but not isoform M1; this CC interaction may compete with that between PKM and FGFR1, and hence CC reduces FGFR1-dependent tyrosine phosphorylation of PKM CC (PubMed:25263439). Interacts with IRF7; this interaction promotes IRF7 CC proteasomal degradation (PubMed:25907537). Interacts with TRAF3; this CC interaction promotes TRAF3 activation (PubMed:32562145). CC {ECO:0000269|PubMed:25263439, ECO:0000269|PubMed:25907537, CC ECO:0000269|PubMed:32562145}. CC -!- INTERACTION: CC Q9UPQ4-2; Q15848: ADIPOQ; NbExp=3; IntAct=EBI-17716262, EBI-10827839; CC Q9UPQ4-2; Q8N9N5-2: BANP; NbExp=3; IntAct=EBI-17716262, EBI-11524452; CC Q9UPQ4-2; Q9NPB3: CABP2; NbExp=3; IntAct=EBI-17716262, EBI-12011224; CC Q9UPQ4-2; P27658: COL8A1; NbExp=3; IntAct=EBI-17716262, EBI-747133; CC Q9UPQ4-2; Q86UW9: DTX2; NbExp=3; IntAct=EBI-17716262, EBI-740376; CC Q9UPQ4-2; Q9H0I2: ENKD1; NbExp=3; IntAct=EBI-17716262, EBI-744099; CC Q9UPQ4-2; P22607: FGFR3; NbExp=3; IntAct=EBI-17716262, EBI-348399; CC Q9UPQ4-2; Q53EP0-3: FNDC3B; NbExp=3; IntAct=EBI-17716262, EBI-10242151; CC Q9UPQ4-2; Q14749: GNMT; NbExp=3; IntAct=EBI-17716262, EBI-744239; CC Q9UPQ4-2; Q14957: GRIN2C; NbExp=3; IntAct=EBI-17716262, EBI-8285963; CC Q9UPQ4-2; P28799: GRN; NbExp=3; IntAct=EBI-17716262, EBI-747754; CC Q9UPQ4-2; I6L957: HNRNPA2B1; NbExp=3; IntAct=EBI-17716262, EBI-1642515; CC Q9UPQ4-2; P42858: HTT; NbExp=9; IntAct=EBI-17716262, EBI-466029; CC Q9UPQ4-2; Q86VF2-5: IGFN1; NbExp=3; IntAct=EBI-17716262, EBI-11955401; CC Q9UPQ4-2; Q63ZY3: KANK2; NbExp=3; IntAct=EBI-17716262, EBI-2556193; CC Q9UPQ4-2; O60333-2: KIF1B; NbExp=3; IntAct=EBI-17716262, EBI-10975473; CC Q9UPQ4-2; P06239-3: LCK; NbExp=3; IntAct=EBI-17716262, EBI-13287659; CC Q9UPQ4-2; P25800: LMO1; NbExp=3; IntAct=EBI-17716262, EBI-8639312; CC Q9UPQ4-2; Q16656-4: NRF1; NbExp=3; IntAct=EBI-17716262, EBI-11742836; CC Q9UPQ4-2; Q9BYG5: PARD6B; NbExp=3; IntAct=EBI-17716262, EBI-295391; CC Q9UPQ4-2; O14737: PDCD5; NbExp=3; IntAct=EBI-17716262, EBI-712290; CC Q9UPQ4-2; Q9UPV7: PHF24; NbExp=3; IntAct=EBI-17716262, EBI-17717171; CC Q9UPQ4-2; P67775: PPP2CA; NbExp=3; IntAct=EBI-17716262, EBI-712311; CC Q9UPQ4-2; O43741: PRKAB2; NbExp=3; IntAct=EBI-17716262, EBI-1053424; CC Q9UPQ4-2; O60260-5: PRKN; NbExp=3; IntAct=EBI-17716262, EBI-21251460; CC Q9UPQ4-2; P86480: PRR20D; NbExp=3; IntAct=EBI-17716262, EBI-12754095; CC Q9UPQ4-2; P47897: QARS1; NbExp=4; IntAct=EBI-17716262, EBI-347462; CC Q9UPQ4-2; Q9Y3C5: RNF11; NbExp=3; IntAct=EBI-17716262, EBI-396669; CC Q9UPQ4-2; Q92529: SHC3; NbExp=3; IntAct=EBI-17716262, EBI-79084; CC Q9UPQ4-2; Q12824-2: SMARCB1; NbExp=3; IntAct=EBI-17716262, EBI-358436; CC Q9UPQ4-2; Q7Z699: SPRED1; NbExp=3; IntAct=EBI-17716262, EBI-5235340; CC Q9UPQ4-2; Q8N8B7-2: TCEANC; NbExp=3; IntAct=EBI-17716262, EBI-11955057; CC Q9UPQ4-2; O75865-2: TRAPPC6A; NbExp=3; IntAct=EBI-17716262, EBI-8451480; CC Q9UPQ4-2; Q9UDY6-2: TRIM10; NbExp=3; IntAct=EBI-17716262, EBI-11981577; CC Q9UPQ4-2; Q96PN8: TSSK3; NbExp=3; IntAct=EBI-17716262, EBI-3918381; CC Q9UPQ4-2; P61086: UBE2K; NbExp=6; IntAct=EBI-17716262, EBI-473850; CC Q9UPQ4-2; Q9UMX0: UBQLN1; NbExp=3; IntAct=EBI-17716262, EBI-741480; CC Q9UPQ4-2; O76024: WFS1; NbExp=3; IntAct=EBI-17716262, EBI-720609; CC Q9UPQ4-2; Q86VK4-3: ZNF410; NbExp=3; IntAct=EBI-17716262, EBI-11741890; CC Q9UPQ4-2; Q9Y649; NbExp=3; IntAct=EBI-17716262, EBI-25900580; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:25263439}. Nucleus CC {ECO:0000250}. Note=Found predominantly in cytoplasm with a granular CC distribution. Found in punctuate nuclear bodies (By similarity). CC {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9UPQ4-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9UPQ4-2; Sequence=VSP_012061; CC -!- INDUCTION: By TLR7 and TLR9 stimulation. {ECO:0000269|PubMed:25907537}. CC -!- DOMAIN: The RING finger domain and the coiled-coil region are required CC for the apoptosis-inducing activity. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the TRIM/RBCC family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAA83050.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF492463; AAO85480.1; -; mRNA. DR EMBL; AB029021; BAA83050.1; ALT_INIT; mRNA. DR EMBL; BC018337; AAH18337.1; -; mRNA. DR EMBL; BC069226; AAH69226.1; -; mRNA. DR CCDS; CCDS6056.2; -. [Q9UPQ4-1] DR RefSeq; NP_741983.2; NM_171982.4. [Q9UPQ4-1] DR AlphaFoldDB; Q9UPQ4; -. DR SMR; Q9UPQ4; -. DR BioGRID; 116716; 105. DR IntAct; Q9UPQ4; 68. DR STRING; 9606.ENSP00000301924; -. DR GlyGen; Q9UPQ4; 1 site, 1 O-linked glycan (1 site). DR iPTMnet; Q9UPQ4; -. DR PhosphoSitePlus; Q9UPQ4; -. DR BioMuta; TRIM35; -. DR DMDM; 56404980; -. DR EPD; Q9UPQ4; -. DR jPOST; Q9UPQ4; -. DR MassIVE; Q9UPQ4; -. DR MaxQB; Q9UPQ4; -. DR PaxDb; 9606-ENSP00000301924; -. DR PeptideAtlas; Q9UPQ4; -. DR ProteomicsDB; 85414; -. [Q9UPQ4-1] DR ProteomicsDB; 85415; -. [Q9UPQ4-2] DR Antibodypedia; 10095; 325 antibodies from 33 providers. DR DNASU; 23087; -. DR Ensembl; ENST00000305364.9; ENSP00000301924.4; ENSG00000104228.13. [Q9UPQ4-1] DR GeneID; 23087; -. DR KEGG; hsa:23087; -. DR MANE-Select; ENST00000305364.9; ENSP00000301924.4; NM_171982.5; NP_741983.2. DR UCSC; uc003xfl.2; human. [Q9UPQ4-1] DR AGR; HGNC:16285; -. DR CTD; 23087; -. DR DisGeNET; 23087; -. DR GeneCards; TRIM35; -. DR HGNC; HGNC:16285; TRIM35. DR HPA; ENSG00000104228; Low tissue specificity. DR MIM; 617007; gene. DR neXtProt; NX_Q9UPQ4; -. DR OpenTargets; ENSG00000104228; -. DR PharmGKB; PA38115; -. DR VEuPathDB; HostDB:ENSG00000104228; -. DR eggNOG; KOG2177; Eukaryota. DR GeneTree; ENSGT00940000160868; -. DR HOGENOM; CLU_013137_0_3_1; -. DR InParanoid; Q9UPQ4; -. DR OMA; CYDPFRE; -. DR OrthoDB; 5479648at2759; -. DR PhylomeDB; Q9UPQ4; -. DR TreeFam; TF334286; -. DR PathwayCommons; Q9UPQ4; -. DR Reactome; R-HSA-877300; Interferon gamma signaling. DR SignaLink; Q9UPQ4; -. DR SIGNOR; Q9UPQ4; -. DR UniPathway; UPA00143; -. DR BioGRID-ORCS; 23087; 21 hits in 1204 CRISPR screens. DR ChiTaRS; TRIM35; human. DR GenomeRNAi; 23087; -. DR Pharos; Q9UPQ4; Tbio. DR PRO; PR:Q9UPQ4; -. DR Proteomes; UP000005640; Chromosome 8. DR RNAct; Q9UPQ4; Protein. DR Bgee; ENSG00000104228; Expressed in calcaneal tendon and 148 other cell types or tissues. DR ExpressionAtlas; Q9UPQ4; baseline and differential. DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB. DR GO; GO:0005634; C:nucleus; ISS:UniProtKB. DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006915; P:apoptotic process; IEA:UniProtKB-KW. DR GO; GO:0045087; P:innate immune response; IDA:UniProtKB. DR GO; GO:0045930; P:negative regulation of mitotic cell cycle; IDA:UniProtKB. DR GO; GO:0043065; P:positive regulation of apoptotic process; IDA:UniProtKB. DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central. DR GO; GO:0044790; P:suppression of viral release by host; IDA:UniProtKB. DR CDD; cd16599; RING-HC_TRIM35_C-IV; 1. DR CDD; cd12893; SPRY_PRY_TRIM35; 1. DR Gene3D; 2.60.120.920; -; 1. DR Gene3D; 3.30.160.60; Classic Zinc Finger; 1. DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1. DR InterPro; IPR001870; B30.2/SPRY. DR InterPro; IPR043136; B30.2/SPRY_sf. DR InterPro; IPR003879; Butyrophylin_SPRY. DR InterPro; IPR013320; ConA-like_dom_sf. DR InterPro; IPR006574; PRY. DR InterPro; IPR003877; SPRY_dom. DR InterPro; IPR027370; Znf-RING_euk. DR InterPro; IPR000315; Znf_B-box. DR InterPro; IPR001841; Znf_RING. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR InterPro; IPR017907; Znf_RING_CS. DR PANTHER; PTHR24103; E3 UBIQUITIN-PROTEIN LIGASE TRIM; 1. DR PANTHER; PTHR24103:SF665; E3 UBIQUITIN-PROTEIN LIGASE TRIM35; 1. DR Pfam; PF13765; PRY; 1. DR Pfam; PF00622; SPRY; 1. DR Pfam; PF00643; zf-B_box; 1. DR Pfam; PF13445; zf-RING_UBOX; 1. DR PRINTS; PR01407; BUTYPHLNCDUF. DR SMART; SM00336; BBOX; 1. DR SMART; SM00589; PRY; 1. DR SMART; SM00184; RING; 1. DR SMART; SM00449; SPRY; 1. DR SUPFAM; SSF57845; B-box zinc-binding domain; 1. DR SUPFAM; SSF49899; Concanavalin A-like lectins/glucanases; 1. DR SUPFAM; SSF57850; RING/U-box; 1. DR PROSITE; PS50188; B302_SPRY; 1. DR PROSITE; PS50119; ZF_BBOX; 1. DR PROSITE; PS00518; ZF_RING_1; 1. DR PROSITE; PS50089; ZF_RING_2; 1. DR Genevisible; Q9UPQ4; HS. PE 1: Evidence at protein level; KW Acetylation; Alternative splicing; Apoptosis; Coiled coil; Cytoplasm; KW Metal-binding; Nucleus; Phosphoprotein; Reference proteome; Transferase; KW Ubl conjugation pathway; Zinc; Zinc-finger. FT CHAIN 1..493 FT /note="E3 ubiquitin-protein ligase TRIM35" FT /id="PRO_0000056250" FT DOMAIN 284..487 FT /note="B30.2/SPRY" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00548" FT ZN_FING 21..61 FT /note="RING-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175" FT ZN_FING 96..137 FT /note="B box-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024" FT COILED 210..251 FT /evidence="ECO:0000255" FT BINDING 101 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024" FT BINDING 104 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024" FT BINDING 123 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024" FT BINDING 129 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024" FT MOD_RES 1 FT /note="N-acetylmethionine" FT /evidence="ECO:0007744|PubMed:21406692" FT MOD_RES 4 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21406692, FT ECO:0007744|PubMed:23186163" FT MOD_RES 8 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21406692" FT VAR_SEQ 146..206 FT /note="AKCRNMEHALREKAKAFWAMRRSYEAIAKHNQVEAAWLEGRIRQEFDKLREF FT LRVEEQAIL -> VRSLIAEERRNFLPTHQWIVTKTRLQTSSPNLQSRRQGQVQEHGAC FT TAGEGQGLLGHAALL (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_012061" SQ SEQUENCE 493 AA; 56540 MW; BFB7E5BFD3AD7E2D CRC64; MERSPDVSPG PSRSFKEELL CAVCYDPFRD AVTLRCGHNF CRGCVSRCWE VQVSPTCPVC KDRASPADLR TNHTLNNLVE KLLREEAEGA RWTSYRFSRV CRLHRGQLSL FCLEDKELLC CSCQADPRHQ GHRVQPVKDT AHDFRAKCRN MEHALREKAK AFWAMRRSYE AIAKHNQVEA AWLEGRIRQE FDKLREFLRV EEQAILDAMA EETRQKQLLA DEKMKQLTEE TEVLAHEIER LQMEMKEDDV SFLMKHKSRK RRLFCTMEPE PVQPGMLIDV CKYLGSLQYR VWKKMLASVE SVPFSFDPNT AAGWLSVSDD LTSVTNHGYR VQVENPERFS SAPCLLGSRV FSQGSHAWEV ALGGLQSWRV GVVRVRQDSG AEGHSHSCYH DTRSGFWYVC RTQGVEGDHC VTSDPATSPL VLAIPRRLRV ELECEEGELS FYDAERHCHL YTFHARFGEV RPYFYLGGAR GAGPPEPLRI CPLHISVKEE LDG //