Q9UNY4 (TTF2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 112.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Transcription termination factor 2 EC=3.6.4.- Alternative name(s): Lodestar homolog RNA polymerase II termination factor Transcription release factor 2 Short name=F2 Short name=HuF2 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1162 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | DsDNA-dependent ATPase which acts as a transcription termination factor by coupling ATP hydrolysis with removal of RNA polymerase II from the DNA template. May contribute to mitotic transcription repression. May also be involved in pre-mRNA splicing. Ref.1 Ref.2 Ref.6 Ref.7 |
| Subunit structure | Interacts with CDC5L. Part of the spliceosome. Ref.2 |
| Subcellular location | Cytoplasm. Nucleus. Note: Cytoplasmic during interphase. Relocates to the nucleus as cells enter mitosis. Ref.7 |
| Sequence similarities | Belongs to the SNF2/RAD54 helicase family. Contains 1 helicase ATP-binding domain. Contains 1 helicase C-terminal domain. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9UNY4-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UNY4-2) The sequence of this isoform differs from the canonical sequence as follows: 635-676: DSCDFTSHGT...NKLRVYLYHG → GRQKCLNSLP...YLITLLENQY 677-1162: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1162 | 1162 | Transcription termination factor 2 | PRO_0000074376 | |||||
Regions | |||||||||
| Domain | 583 – 786 | 204 | Helicase ATP-binding | ||||||
| Domain | 995 – 1157 | 163 | Helicase C-terminal | ||||||
| Nucleotide binding | 596 – 603 | 8 | ATP Potential | ||||||
| Motif | 737 – 740 | 4 | DEAH box | ||||||
Amino acid modifications | |||||||||
| Modified residue | 460 | 1 | Phosphoserine Ref.9 Ref.10 | ||||||
| Modified residue | 883 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 908 | 1 | Phosphoserine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 635 – 676 | 42 | DSCDF…YLYHG → GRQKCLNSLPFPTSFEPPKR GTSSAKKGHLWSYLITLLEN QY in isoform 2. | VSP_015370 | |||||
| Alternative sequence | 677 – 1162 | 486 | Missing in isoform 2. | VSP_015371 | |||||
| Natural variant | 167 | 1 | K → E. Ref.3 Corresponds to variant rs998532 [ dbSNP | Ensembl ]. | VAR_023393 | |||||
| Natural variant | 213 | 1 | K → R. Corresponds to variant rs7535524 [ dbSNP | Ensembl ]. | VAR_034431 | |||||
| Natural variant | 256 | 1 | E → G. Corresponds to variant rs34334470 [ dbSNP | Ensembl ]. | VAR_061234 | |||||
| Natural variant | 1134 | 1 | K → R. Corresponds to variant rs41276572 [ dbSNP | Ensembl ]. | VAR_061235 | |||||
| Natural variant | 1155 | 1 | D → H. Ref.2 Corresponds to variant rs34236116 [ dbSNP | Ensembl ]. | VAR_061236 | |||||
Experimental info | |||||||||
| Sequence conflict | 64 | 1 | L → P in AAD49435. Ref.2 | ||||||
| Sequence conflict | 80 | 1 | R → G in AAD49435. Ref.2 | ||||||
| Sequence conflict | 675 | 1 | H → R in AAC64044. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A human RNA polymerase II transcription termination factor is a SWI2/SNF2 family member." Liu M., Xie Z., Price D.H. J. Biol. Chem. 273:25541-25544(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION. |
| [2] | "hLodestar/HuF2 interacts with CDC5L and is involved in pre-mRNA splicing." Leonard D., Ajuh P., Lamond A.I., Legerski R.J. Biochem. Biophys. Res. Commun. 308:793-801(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH CDC5L, IDENTIFICATION AS PART OF THE SPLICEOSOME, VARIANT HIS-1155. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT GLU-167. |
| [4] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [6] | "Human transcription release factor 2 dissociates RNA polymerases I and II stalled at a cyclobutane thymine dimer." Hara R., Selby C.P., Liu M., Price D.H., Sancar A. J. Biol. Chem. 274:24779-24786(1999) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [7] | "Involvement of transcription termination factor 2 in mitotic repression of transcription elongation." Jiang Y., Liu M., Spencer C.A., Price D.H. Mol. Cell 14:375-385(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [8] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-460 AND SER-883, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-460 AND SER-908, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF073771 mRNA. Translation: AAC64044.1. AF080255 mRNA. Translation: AAD49435.1. AK291017 mRNA. Translation: BAF83706.1. AL445231, AL391476 Genomic DNA. Translation: CAH71961.1. AL391476, AL445231 Genomic DNA. Translation: CAI12738.1. AL391476 Genomic DNA. Translation: CAI12731.1. BC030058 mRNA. Translation: AAH30058.1. |
| IPI | IPI00290812. IPI00640904. |
| RefSeq | NP_003585.3. NM_003594.3. |
| UniGene | Hs.486818. Hs.735195. |
3D structure databases | |
| ProteinModelPortal | Q9UNY4. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9UNY4. 2 interactions. |
| MINT | MINT-272557. |
| STRING | 9606.ENSP00000358478. |
PTM databases | |
| PhosphoSite | Q9UNY4. |
Polymorphism databases | |
| DMDM | 73920148. |
Proteomic databases | |
| PaxDb | Q9UNY4. |
| PRIDE | Q9UNY4. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000369466; ENSP00000358478; ENSG00000116830. ENST00000427271; ENSP00000408111; ENSG00000116830. |
| GeneID | 8458. |
| KEGG | hsa:8458. |
| UCSC | uc001egx.1. human. uc001egy.3. human. |
Organism-specific databases | |
| CTD | 8458. |
| GeneCards | GC01P117602. |
| H-InvDB | HIX0000933. |
| HGNC | HGNC:12398. TTF2. |
| HPA | HPA005776. |
| MIM | 604718. gene. |
| neXtProt | NX_Q9UNY4. |
| PharmGKB | PA37063. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0553. |
| HOGENOM | HOG000154708. |
| HOVERGEN | HBG053179. |
| InParanoid | Q9UNY4. |
| KO | K15173. |
| OMA | WCGSIPW. |
| OrthoDB | EOG4GMTWH. |
| PhylomeDB | Q9UNY4. |
Gene expression databases | |
| Bgee | Q9UNY4. |
| CleanEx | HS_TTF2. |
| Genevestigator | Q9UNY4. |
| GermOnline | ENSG00000116830. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR002464. DNA/RNA_helicase_DEAH_CS. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR027417. P-loop_NTPase. IPR000330. SNF2_N. IPR010666. Znf_GRF. [Graphical view] |
| Pfam | PF00271. Helicase_C. 1 hit. PF00176. SNF2_N. 1 hit. PF06839. zf-GRF. 1 hit. [Graphical view] |
| SMART | SM00487. DEXDc. 1 hit. SM00490. HELICc. 1 hit. [Graphical view] |
| SUPFAM | SSF52540. SSF52540. 2 hits. |
| PROSITE | PS00690. DEAH_ATP_HELICASE. 1 hit. PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | TTF2. human. |
| GenomeRNAi | 8458. |
| NextBio | 31654. |
| SOURCE | Search... |
Entry information
| Entry name | TTF2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UNY4 Secondary accession number(s): A8K4Q2 Q8N6I8 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
