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Q9UNM6

- PSD13_HUMAN

UniProt

Q9UNM6 - PSD13_HUMAN

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Protein

26S proteasome non-ATPase regulatory subunit 13

Gene

PSMD13

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

GO - Biological processi

  1. anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process Source: Reactome
  2. antigen processing and presentation of exogenous peptide antigen via MHC class I Source: Reactome
  3. antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent Source: Reactome
  4. antigen processing and presentation of peptide antigen via MHC class I Source: Reactome
  5. apoptotic process Source: Reactome
  6. cellular nitrogen compound metabolic process Source: Reactome
  7. DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest Source: Reactome
  8. G1/S transition of mitotic cell cycle Source: Reactome
  9. gene expression Source: Reactome
  10. meiosis I Source: Ensembl
  11. mitotic cell cycle Source: Reactome
  12. mRNA metabolic process Source: Reactome
  13. negative regulation of apoptotic process Source: Reactome
  14. negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Source: Reactome
  15. positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Source: Reactome
  16. protein polyubiquitination Source: Reactome
  17. regulation of apoptotic process Source: Reactome
  18. regulation of cellular amino acid metabolic process Source: Reactome
  19. regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Source: Reactome
  20. RNA metabolic process Source: Reactome
  21. small molecule metabolic process Source: Reactome
  22. viral process Source: Reactome
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_111056. Cross-presentation of soluble exogenous antigens (endosomes).
REACT_111178. ER-Phagosome pathway.
REACT_1156. Orc1 removal from chromatin.
REACT_118656. Activation of NF-kappaB in B cells.
REACT_1221. CDK-mediated phosphorylation and removal of Cdc6.
REACT_13464. Regulation of activated PAK-2p34 by proteasome mediated degradation.
REACT_13565. Regulation of ornithine decarboxylase (ODC).
REACT_150471. Separation of Sister Chromatids.
REACT_1614. Ubiquitin Mediated Degradation of Phosphorylated Cdc25A.
REACT_172638. Asymmetric localization of PCP proteins.
REACT_1949. CDT1 association with the CDC6:ORC:origin complex.
REACT_200766. degradation of AXIN.
REACT_200841. degradation of DVL.
REACT_20549. Autodegradation of the E3 ubiquitin ligase COP1.
REACT_25325. AUF1 (hnRNP D0) destabilizes mRNA.
REACT_4. Ubiquitin-dependent degradation of Cyclin D1.
REACT_6761. APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1.
REACT_6785. Autodegradation of Cdh1 by Cdh1:APC/C.
REACT_6821. SCF-beta-TrCP mediated degradation of Emi1.
REACT_6871. APC/C:Cdc20 mediated degradation of Securin.
REACT_75842. Antigen processing: Ubiquitination & Proteasome degradation.
REACT_9003. SCF(Skp2)-mediated degradation of p27/p21.
REACT_9031. Vpu mediated degradation of CD4.
REACT_9453. Vif-mediated degradation of APOBEC3G.

Names & Taxonomyi

Protein namesi
Recommended name:
26S proteasome non-ATPase regulatory subunit 13
Alternative name(s):
26S proteasome regulatory subunit RPN9
26S proteasome regulatory subunit S11
26S proteasome regulatory subunit p40.5
Gene namesi
Name:PSMD13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 11

Organism-specific databases

HGNCiHGNC:9558. PSMD13.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: Reactome
  2. extracellular vesicular exosome Source: UniProt
  3. membrane Source: UniProtKB
  4. nucleoplasm Source: Reactome
  5. nucleus Source: UniProt
  6. proteasome accessory complex Source: UniProtKB
  7. proteasome complex Source: UniProtKB
  8. proteasome regulatory particle Source: ProtInc
Complete GO annotation...

Keywords - Cellular componenti

Proteasome

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA33904.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 37637626S proteasome non-ATPase regulatory subunit 13PRO_0000173867Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei298 – 2981N6-acetyllysine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ9UNM6.
PaxDbiQ9UNM6.
PRIDEiQ9UNM6.

PTM databases

PhosphoSiteiQ9UNM6.

Expressioni

Gene expression databases

BgeeiQ9UNM6.
CleanExiHS_PSMD13.
ExpressionAtlasiQ9UNM6. baseline and differential.
GenevestigatoriQ9UNM6.

Organism-specific databases

HPAiHPA038692.

Interactioni

Subunit structurei

Component of the PA700 complex.

Protein-protein interaction databases

BioGridi111691. 80 interactions.
DIPiDIP-27576N.
IntActiQ9UNM6. 12 interactions.
MINTiMINT-1161305.
STRINGi9606.ENSP00000396937.

Structurei

3D structure databases

ProteinModelPortaliQ9UNM6.
SMRiQ9UNM6. Positions 16-363.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini239 – 33597PCIAdd
BLAST

Sequence similaritiesi

Belongs to the proteasome subunit S11 family.Curated
Contains 1 PCI domain.Curated

Phylogenomic databases

eggNOGiNOG272621.
GeneTreeiENSGT00390000001802.
HOGENOMiHOG000216633.
HOVERGENiHBG053740.
InParanoidiQ9UNM6.
KOiK03039.
OMAiFNSGDVE.
OrthoDBiEOG7C5M8X.
PhylomeDBiQ9UNM6.
TreeFamiTF105612.

Family and domain databases

InterProiIPR000717. PCI_dom.
[Graphical view]
PfamiPF01399. PCI. 1 hit.
[Graphical view]
SMARTiSM00088. PINT. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9UNM6-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MKDVPGFLQQ SQNSGPGQPA VWHRLEELYT KKLWHQLTLQ VLDFVQDPCF
60 70 80 90 100
AQGDGLIKLY ENFISEFEHR VNPLSLVEII LHVVRQMTDP NVALTFLEKT
110 120 130 140 150
REKVKSSDEA VILCKTAIGA LKLNIGDLQV TKETIEDVEE MLNNLPGVTS
160 170 180 190 200
VHSRFYDLSS KYYQTIGNHA SYYKDALRFL GCVDIKDLPV SEQQERAFTL
210 220 230 240 250
GLAGLLGEGV FNFGELLMHP VLESLRNTDR QWLIDTLYAF NSGNVERFQT
260 270 280 290 300
LKTAWGQQPD LAANEAQLLR KIQLLCLMEM TFTRPANHRQ LTFEEIAKSA
310 320 330 340 350
KITVNEVELL VMKALSVGLV KGSIDEVDKR VHMTWVQPRV LDLQQIKGMK
360 370
DRLEFWCTDV KSMEMLVEHQ AHDILT
Length:376
Mass (Da):42,945
Last modified:January 11, 2011 - v2
Checksum:iE96C99A49CAC5ED3
GO
Isoform 2 (identifier: Q9UNM6-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     32-69: KLWHQLTLQV...YENFISEFEH → NFMKTLSVNL...RCSKAGGFYF

Show »
Length:378
Mass (Da):42,942
Checksum:i1826DB496A31D7BB
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti253 – 2531T → I in AAC64104. (PubMed:10225435)Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti13 – 131N → S.6 Publications
Corresponds to variant rs1045288 [ dbSNP | Ensembl ].
VAR_024591
Natural varianti150 – 1501S → L.
Corresponds to variant rs28927679 [ dbSNP | Ensembl ].
VAR_057050
Natural varianti204 – 2041G → E.
Corresponds to variant rs1794108 [ dbSNP | Ensembl ].
VAR_031094
Natural varianti205 – 2051L → F.
Corresponds to variant rs1794109 [ dbSNP | Ensembl ].
VAR_031095

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei32 – 6938KLWHQ…SEFEH → NFMKTLSVNLNTGKSLSSVF HFENECIDARRCSKAGGFYF in isoform 2. 1 PublicationVSP_041067Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB009398 mRNA. Translation: BAA33214.1.
AF107837 mRNA. Translation: AAD43442.1.
AF086708 mRNA. Translation: AAC64104.1.
BT007307 mRNA. Translation: AAP35971.1.
AK094775 mRNA. Translation: BAG52927.1.
AC136475 Genomic DNA. No translation available.
CH471278 Genomic DNA. Translation: EAW61234.1.
BC001100 mRNA. Translation: AAH01100.1.
BC001747 mRNA. Translation: AAH01747.1.
CCDSiCCDS44504.1. [Q9UNM6-2]
CCDS7692.1. [Q9UNM6-1]
RefSeqiNP_002808.3. NM_002817.3. [Q9UNM6-1]
NP_787128.2. NM_175932.2. [Q9UNM6-2]
UniGeneiHs.134688.

Genome annotation databases

EnsembliENST00000431206; ENSP00000396937; ENSG00000185627. [Q9UNM6-2]
ENST00000532097; ENSP00000436186; ENSG00000185627. [Q9UNM6-1]
GeneIDi5719.
KEGGihsa:5719.
UCSCiuc001lol.2. human. [Q9UNM6-1]
uc001loo.2. human. [Q9UNM6-2]

Polymorphism databases

DMDMi317373273.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB009398 mRNA. Translation: BAA33214.1 .
AF107837 mRNA. Translation: AAD43442.1 .
AF086708 mRNA. Translation: AAC64104.1 .
BT007307 mRNA. Translation: AAP35971.1 .
AK094775 mRNA. Translation: BAG52927.1 .
AC136475 Genomic DNA. No translation available.
CH471278 Genomic DNA. Translation: EAW61234.1 .
BC001100 mRNA. Translation: AAH01100.1 .
BC001747 mRNA. Translation: AAH01747.1 .
CCDSi CCDS44504.1. [Q9UNM6-2 ]
CCDS7692.1. [Q9UNM6-1 ]
RefSeqi NP_002808.3. NM_002817.3. [Q9UNM6-1 ]
NP_787128.2. NM_175932.2. [Q9UNM6-2 ]
UniGenei Hs.134688.

3D structure databases

ProteinModelPortali Q9UNM6.
SMRi Q9UNM6. Positions 16-363.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 111691. 80 interactions.
DIPi DIP-27576N.
IntActi Q9UNM6. 12 interactions.
MINTi MINT-1161305.
STRINGi 9606.ENSP00000396937.

PTM databases

PhosphoSitei Q9UNM6.

Polymorphism databases

DMDMi 317373273.

Proteomic databases

MaxQBi Q9UNM6.
PaxDbi Q9UNM6.
PRIDEi Q9UNM6.

Protocols and materials databases

DNASUi 5719.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000431206 ; ENSP00000396937 ; ENSG00000185627 . [Q9UNM6-2 ]
ENST00000532097 ; ENSP00000436186 ; ENSG00000185627 . [Q9UNM6-1 ]
GeneIDi 5719.
KEGGi hsa:5719.
UCSCi uc001lol.2. human. [Q9UNM6-1 ]
uc001loo.2. human. [Q9UNM6-2 ]

Organism-specific databases

CTDi 5719.
GeneCardsi GC11P000226.
H-InvDB HIX0009340.
HGNCi HGNC:9558. PSMD13.
HPAi HPA038692.
MIMi 603481. gene.
neXtProti NX_Q9UNM6.
PharmGKBi PA33904.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG272621.
GeneTreei ENSGT00390000001802.
HOGENOMi HOG000216633.
HOVERGENi HBG053740.
InParanoidi Q9UNM6.
KOi K03039.
OMAi FNSGDVE.
OrthoDBi EOG7C5M8X.
PhylomeDBi Q9UNM6.
TreeFami TF105612.

Enzyme and pathway databases

Reactomei REACT_111056. Cross-presentation of soluble exogenous antigens (endosomes).
REACT_111178. ER-Phagosome pathway.
REACT_1156. Orc1 removal from chromatin.
REACT_118656. Activation of NF-kappaB in B cells.
REACT_1221. CDK-mediated phosphorylation and removal of Cdc6.
REACT_13464. Regulation of activated PAK-2p34 by proteasome mediated degradation.
REACT_13565. Regulation of ornithine decarboxylase (ODC).
REACT_150471. Separation of Sister Chromatids.
REACT_1614. Ubiquitin Mediated Degradation of Phosphorylated Cdc25A.
REACT_172638. Asymmetric localization of PCP proteins.
REACT_1949. CDT1 association with the CDC6:ORC:origin complex.
REACT_200766. degradation of AXIN.
REACT_200841. degradation of DVL.
REACT_20549. Autodegradation of the E3 ubiquitin ligase COP1.
REACT_25325. AUF1 (hnRNP D0) destabilizes mRNA.
REACT_4. Ubiquitin-dependent degradation of Cyclin D1.
REACT_6761. APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1.
REACT_6785. Autodegradation of Cdh1 by Cdh1:APC/C.
REACT_6821. SCF-beta-TrCP mediated degradation of Emi1.
REACT_6871. APC/C:Cdc20 mediated degradation of Securin.
REACT_75842. Antigen processing: Ubiquitination & Proteasome degradation.
REACT_9003. SCF(Skp2)-mediated degradation of p27/p21.
REACT_9031. Vpu mediated degradation of CD4.
REACT_9453. Vif-mediated degradation of APOBEC3G.

Miscellaneous databases

ChiTaRSi PSMD13. human.
GeneWikii PSMD13.
GenomeRNAii 5719.
NextBioi 22226.
PROi Q9UNM6.
SOURCEi Search...

Gene expression databases

Bgeei Q9UNM6.
CleanExi HS_PSMD13.
ExpressionAtlasi Q9UNM6. baseline and differential.
Genevestigatori Q9UNM6.

Family and domain databases

InterProi IPR000717. PCI_dom.
[Graphical view ]
Pfami PF01399. PCI. 1 hit.
[Graphical view ]
SMARTi SM00088. PINT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "cDNA cloning and functional analysis of p28 (Nas6p) and p40.5 (Nas7p), two novel regulatory subunits of the 26S proteasome."
    Hori T., Kato S., Saeki M., DeMartino G.N., Slaughter C.A., Takeuchi J., Toh-e A., Tanaka K.
    Gene 216:113-122(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "Cloning of the human 26S proteasome subunit p40.5."
    Ting M.C., Chang L.Y.
    Submitted (NOV-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT SER-13.
    Tissue: Liver.
  3. "Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome."
    Hoffman L., Gorbea C., Rechsteiner M.
    FEBS Lett. 449:88-92(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT SER-13.
  4. "Cloning of human full-length CDSs in BD Creator(TM) system donor vector."
    Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A.
    Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT SER-13.
  5. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Brain.
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT SER-13.
  8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT SER-13.
    Tissue: Kidney and Lung.
  9. "Lysine acetylation targets protein complexes and co-regulates major cellular functions."
    Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.
    Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-298, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  11. "Mass spectrometric characterization of the affinity-purified human 26S proteasome complex."
    Wang X., Chen C.-F., Baker P.R., Chen P.-L., Kaiser P., Huang L.
    Biochemistry 46:3553-3565(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: VARIANT [LARGE SCALE ANALYSIS] SER-13, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic kidney.

Entry informationi

Entry nameiPSD13_HUMAN
AccessioniPrimary (citable) accession number: Q9UNM6
Secondary accession number(s): B3KT15
, O75831, Q53XU2, Q9UNV3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2002
Last sequence update: January 11, 2011
Last modified: October 29, 2014
This is version 126 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3