Q9UNL4 (ING4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 100.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Inhibitor of growth protein 4 Alternative name(s): p29ING4 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 249 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the HBO1 complex which has a histone H4-specific acetyltransferase activity, a reduced activity toward histone H3 and is responsible for the bulk of histone H4 acetylation in vivo. Through chromatin acetylation it may function in DNA replication. May inhibit tumor progression by modulating the transcriptional output of signaling pathways which regulate cell proliferation. Can suppress brain tumor angiogenesis through transcriptional repression of RELA/NFKB3 target genes when complexed with RELA. May also specifically suppress loss of contact inhibition elicited by activated oncogenes such as MYC. Represses hypoxia inducible factor's (HIF) activity by interacting with HIF prolyl hydroxylase 2 (EGLN1). Ref.1 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 |
| Subunit structure | Interacts with H3K4me3 and to a lesser extent with H3K4me2. Component of the HBO1 complex composed at least of ING4 or ING5, KAT7/HBO1, MEAF6, and one of PHF15, PHF16 and PHF17. Interacts with EP300, RELA and TP53; these interactions may be indirect. Interacts with EGLN1. Ref.1 Ref.9 Ref.11 Ref.14 |
| Subcellular location | |
| Domain | The PHD-type zinc finger mediates the binding to H3K4me3. Ref.14 |
| Sequence similarities | Belongs to the ING family. Contains 1 PHD-type zinc finger. |
| Sequence caution | The sequence AAG43153.1 differs from that shown. Reason: Frameshift at positions 240 and 243. |
Ontologies
Alternative products
| This entry describes 8 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9UNL4-1) Also known as: ING4_v1; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UNL4-2) The sequence of this isoform differs from the canonical sequence as follows: 131-131: K → S 132-132: Missing. | ||||||
| Note: May be due to a competing donor splice site. | ||||||
| Isoform 3 (identifier: Q9UNL4-3) Also known as: deltaEx2; The sequence of this isoform differs from the canonical sequence as follows: 13-37: SIENLPFELQRNFQLMRDLDQRTED → N | ||||||
| Isoform 4 (identifier: Q9UNL4-4) Also known as: ING4_v4; The sequence of this isoform differs from the canonical sequence as follows: 129-132: Missing. | ||||||
| Note: Lacks the nuclear localization signal (NLS), resulting in increased cytoplasmic localization. | ||||||
| Isoform 5 (identifier: Q9UNL4-5) The sequence of this isoform differs from the canonical sequence as follows: 128-131: GKKK → E | ||||||
| Isoform 6 (identifier: Q9UNL4-6) Also known as: ING4_v2; The sequence of this isoform differs from the canonical sequence as follows: 131-131: Missing. | ||||||
| Note: Lacks the nuclear localization signal (NLS), resulting in increased cytoplasmic localization. | ||||||
| Isoform 7 (identifier: Q9UNL4-7) Also known as: ING4_v3; The sequence of this isoform differs from the canonical sequence as follows: 128-130: Missing. | ||||||
| Note: Lacks the nuclear localization signal (NLS), resulting in increased cytoplasmic localization. | ||||||
| Isoform 8 (identifier: Q9UNL4-8) Also known as: deltaEx6A; The sequence of this isoform differs from the canonical sequence as follows: 168-249: SPEYGMPSVT...PRCSQERKKK → VPLSGSILPVWG |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||
Molecule processing | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 249 | 249 | Inhibitor of growth protein 4 | PRO_0000212668 | ||||||||||||||||
Regions | ||||||||||||||||||||
| Zinc finger | 196 – 245 | 50 | PHD-type | |||||||||||||||||
| Coiled coil | 25 – 118 | 94 | Potential | |||||||||||||||||
Sites | ||||||||||||||||||||
| Binding site | 198 | 1 | Histone H3K4me3 By similarity | |||||||||||||||||
| Binding site | 209 | 1 | Histone H3K4me3 By similarity | |||||||||||||||||
| Binding site | 213 | 1 | Histone H3K4me3 By similarity | |||||||||||||||||
| Binding site | 221 | 1 | Histone H3K4me3 By similarity | |||||||||||||||||
Amino acid modifications | ||||||||||||||||||||
| Modified residue | 112 | 1 | N6-acetyllysine Ref.15 | |||||||||||||||||
| Modified residue | 127 | 1 | N6-acetyllysine Ref.13 Ref.15 | |||||||||||||||||
| Modified residue | 129 | 1 | N6-acetyllysine Ref.13 | |||||||||||||||||
| Modified residue | 146 | 1 | N6-acetyllysine Ref.13 Ref.15 | |||||||||||||||||
| Modified residue | 148 | 1 | N6-acetyllysine Ref.13 Ref.15 | |||||||||||||||||
| Modified residue | 150 | 1 | Phosphoserine By similarity | |||||||||||||||||
| Modified residue | 156 | 1 | N6-acetyllysine Ref.15 | |||||||||||||||||
Natural variations | ||||||||||||||||||||
| Alternative sequence | 13 – 37 | 25 | SIENL…QRTED → N in isoform 3. | VSP_041288 | ||||||||||||||||
| Alternative sequence | 128 – 131 | 4 | GKKK → E in isoform 5. | VSP_041289 | ||||||||||||||||
| Alternative sequence | 128 – 130 | 3 | Missing in isoform 7. | VSP_041290 | ||||||||||||||||
| Alternative sequence | 129 – 132 | 4 | Missing in isoform 4. | VSP_041291 | ||||||||||||||||
| Alternative sequence | 131 | 1 | K → S in isoform 2. | VSP_012518 | ||||||||||||||||
| Alternative sequence | 131 | 1 | Missing in isoform 6. | VSP_041292 | ||||||||||||||||
| Alternative sequence | 132 | 1 | Missing in isoform 2. | VSP_012519 | ||||||||||||||||
| Alternative sequence | 168 – 249 | 82 | SPEYG…ERKKK → VPLSGSILPVWG in isoform 8. | VSP_041293 | ||||||||||||||||
Secondary structure | ||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||
| Turn | 199 – 202 | 4 | ||||||||||||||||||
| Beta strand | 207 – 211 | 5 | ||||||||||||||||||
| Beta strand | 221 – 223 | 3 | ||||||||||||||||||
| Helix | 224 – 227 | 4 | ||||||||||||||||||
| Helix | 240 – 243 | 4 | ||||||||||||||||||
| Turn | 246 – 248 | 3 | ||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "p29ING4 and p28ING5 bind to p53 and p300, and enhance p53 activity." Shiseki M., Nagashima M., Pedeux R.M., Kitahama-Shiseki M., Miura K., Okamura S., Onogi H., Higashimoto Y., Appella E., Yokota J., Harris C.C. Cancer Res. 63:2373-2378(2003) [PubMed: 12750254] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH EP300 AND TP53. Tissue: Placenta. |
| [2] | "Novel splice variants of ING4 and their possible roles in the regulation of cell growth and motility." Unoki M., Shen J.C., Zheng Z.M., Harris C.C. J. Biol. Chem. 281:34677-34686(2006) [PubMed: 16973615] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 4; 5; 6 AND 7), SUBCELLULAR LOCATION, ALTERNATIVE SPLICING. |
| [3] | "Detection of novel mRNA splice variants of human ING4 tumor suppressor gene." Raho G., Miranda C., Tamborini E., Pierotti M.A., Greco A. Oncogene 26:5247-5257(2007) [PubMed: 17325660] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), ALTERNATIVE SPLICING (ISOFORM 8). |
| [4] | Mao Y.M., Xie Y., Zheng Z.H. Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Fetal brain. |
| [5] | "Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning." Hu R.-M., Han Z.-G., Song H.-D., Peng Y.-D., Huang Q.-H., Ren S.-X., Gu Y.-J., Huang C.-H., Li Y.-B., Jiang C.-L., Fu G., Zhang Q.-H., Gu B.-W., Dai M., Mao Y.-F., Gao G.-F., Rong R., Ye M. Chen J.-L.Proc. Natl. Acad. Sci. U.S.A. 97:9543-9548(2000) [PubMed: 10931946] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Pituitary. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-248 (ISOFORM 2). Tissue: B-cell and Lung. |
| [8] | "ING4 induces G2/M cell cycle arrest and enhances the chemosensitivity to DNA-damage agents in HepG2 cells." Zhang X., Xu L.-S., Wang Z.-Q., Wang K.-S., Li N., Cheng Z.-H., Huang S.-Z., Wei D.-Z., Han Z.-G. FEBS Lett. 570:7-12(2004) [PubMed: 15251430] [Abstract] Cited for: FUNCTION. |
| [9] | "The candidate tumour suppressor protein ING4 regulates brain tumour growth and angiogenesis." Garkavtsev I., Kozin S.V., Chernova O., Xu L., Winkler F., Brown E., Barnett G.H., Jain R.K. Nature 428:328-332(2004) [PubMed: 15029197] [Abstract] Cited for: FUNCTION, INTERACTION WITH RELA, SUBCELLULAR LOCATION. |
| [10] | "A screen for genes that suppress loss of contact inhibition: Identification of ING4 as a candidate tumor suppressor gene in human cancer." Kim S., Chin K., Gray J.W., Bishop J.M. Proc. Natl. Acad. Sci. U.S.A. 101:16251-16256(2004) [PubMed: 15528276] [Abstract] Cited for: FUNCTION. |
| [11] | "The candidate tumor suppressor ING4 represses activation of the hypoxia inducible factor (HIF)." Ozer A., Wu L.C., Bruick R.K. Proc. Natl. Acad. Sci. U.S.A. 102:7481-7486(2005) [PubMed: 15897452] [Abstract] Cited for: FUNCTION, INTERACTION WITH EGLN1. |
| [12] | "ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation." Doyon Y., Cayrou C., Ullah M., Landry A.-J., Cote V., Selleck W., Lane W.S., Tan S., Yang X.-J., Cote J. Mol. Cell 21:51-64(2006) [PubMed: 16387653] [Abstract] Cited for: FUNCTION IN HISTONE ACETYLATION, FUNCTION IN DNA REPLICATION, FUNCTION IN TP53-MEDIATED TRANSCRIPTION, IDENTIFICATION IN THE HBO1 COMPLEX. |
| [13] | "Substrate and functional diversity of lysine acetylation revealed by a proteomics survey." Kim S.C., Sprung R., Chen Y., Xu Y., Ball H., Pei J., Cheng T., Kho Y., Xiao H., Xiao L., Grishin N.V., White M., Yang X.-J., Zhao Y. Mol. Cell 23:607-618(2006) [PubMed: 16916647] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-127; LYS-129; LYS-146 AND LYS-148, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression." Shi X., Hong T., Walter K.L., Ewalt M., Michishita E., Hung T., Carney D., Pena P., Lan F., Kaadige M.R., Lacoste N., Cayrou C., Davrazou F., Saha A., Cairns B.R., Ayer D.E., Kutateladze T.G., Shi Y. Gozani O.Nature 442:96-99(2006) [PubMed: 16728974] [Abstract] Cited for: DOMAIN PHD-TYPE ZINC FINGER, INTERACTION WITH HISTONES H3K4ME3 AND H3K4ME2. |
| [15] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-112; LYS-127; LYS-146; LYS-148 AND LYS-156, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF156552 mRNA. Translation: AAL79773.1. AB197696 mRNA. Translation: BAF30478.1. AB197697 mRNA. Translation: BAF30479.1. EF152349 mRNA. Translation: ABO61139.1. AF063594 mRNA. Translation: AAG43153.1. Frameshift. AF110645 mRNA. Translation: AAD48585.1. CH471116 Genomic DNA. Translation: EAW88763.1. CH471116 Genomic DNA. Translation: EAW88770.1. BC007781 mRNA. Translation: AAH07781.1. BC013038 mRNA. Translation: AAH13038.2. | ||||||||||||||||||||||||
| IPI | IPI00396000. IPI00743143. IPI00797005. IPI00894209. IPI00895891. IPI00895925. IPI01018051. IPI01018087. | ||||||||||||||||||||||||
| RefSeq | NP_001121054.1. NM_001127582.1. NP_001121055.1. NM_001127583.1. NP_001121056.1. NM_001127584.1. NP_001121057.1. NM_001127585.1. NP_001121058.1. NM_001127586.1. | ||||||||||||||||||||||||
| UniGene | Hs.524210. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||
| ProteinModelPortal | Q9UNL4. | ||||||||||||||||||||||||
| SMR | Q9UNL4. Positions 169-245. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| IntAct | Q9UNL4. 2 interactions. | ||||||||||||||||||||||||
| MINT | MINT-1202585. | ||||||||||||||||||||||||
| STRING | Q9UNL4. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | Q9UNL4. | ||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||
| DMDM | 57012981. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PRIDE | Q9UNL4. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000396807; ENSP00000380024; ENSG00000111653. ENST00000412586; ENSP00000412705; ENSG00000111653. ENST00000444704; ENSP00000397343; ENSG00000111653. ENST00000446105; ENSP00000415903; ENSG00000111653. | ||||||||||||||||||||||||
| GeneID | 51147. | ||||||||||||||||||||||||
| KEGG | hsa:51147. | ||||||||||||||||||||||||
| UCSC | uc001qpv.2. human. uc001qpw.2. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 51147. | ||||||||||||||||||||||||
| GeneCards | GC12M006759. | ||||||||||||||||||||||||
| H-InvDB | HIX0010371. | ||||||||||||||||||||||||
| HGNC | HGNC:19423. ING4. | ||||||||||||||||||||||||
| MIM | 608524. gene. | ||||||||||||||||||||||||
| neXtProt | NX_Q9UNL4. | ||||||||||||||||||||||||
| PharmGKB | PA134976283. | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| GeneTree | ENSGT00550000074538. | ||||||||||||||||||||||||
| HOGENOM | HBG716496. | ||||||||||||||||||||||||
| HOVERGEN | HBG006607. | ||||||||||||||||||||||||
| InParanoid | Q9UNL4. | ||||||||||||||||||||||||
| OMA | EYTANAR. | ||||||||||||||||||||||||
| OrthoDB | EOG40CHHT. | ||||||||||||||||||||||||
| PhylomeDB | Q9UNL4. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | Q9UNL4. | ||||||||||||||||||||||||
| Bgee | Q9UNL4. | ||||||||||||||||||||||||
| CleanEx | HS_ING4. | ||||||||||||||||||||||||
| Genevestigator | Q9UNL4. | ||||||||||||||||||||||||
| GermOnline | ENSG00000111653. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR024610. ING_N. IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||||||||||||||
| Gene3D | G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit. | ||||||||||||||||||||||||
| KO | K11346. | ||||||||||||||||||||||||
| Pfam | PF12998. ING. 1 hit. PF00628. PHD. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| SMART | SM00249. PHD. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| SUPFAM | SSF57903. FYVE_PHD_ZnF. 1 hit. | ||||||||||||||||||||||||
| PROSITE | PS01359. ZF_PHD_1. 1 hit. PS50016. ZF_PHD_2. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| NextBio | 54021. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | ING4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UNL4 Secondary accession number(s): A4KYM4 Q9H3J0 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with