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Reviewed, UniProtKB/Swiss-Prot Q9UMZ2 (SYNRG_HUMAN)

Last modified November 24, 2009. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Synergin gamma
Alternative name(s):
    AP1 subunit gamma-binding protein 1
    Gamma-synergin
Gene names
Name: SYNRG
Synonyms: AP1GBP1, SYNG
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1314 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

May play a role in endocytosis and/or membrane trafficking at the trans-Golgi network (TGN). May act by linking the adapter protein complex AP-1 to other proteins.

Subunit structure

Interacts with SCAMP1 via its EH-domain By similarity. Interacts with GGA1, GGA2 and GGA3. Interacts with the AP1G1 and AP1G2 subunits of the adapter protein complexes AP-1.

Subcellular location

Cytoplasm By similarity. Golgi apparatustrans-Golgi network membrane; Peripheral membrane protein By similarity. Note: Associates with membranes via the adapter protein complex AP-1. Colocalizes with AP1G1 By similarity.

Domain

The DFXDF motifs mediate the interaction with gamma-appendage subunits AP1G1 and AP1G2. Ref.5

Sequence similarities

Contains 1 EH domain.

Sequence caution

The sequence AK126988 differs from that shown. Reason: Miscellaneous discrepancy. Intron retention.

Ontologies

Keywords
   Biological processEndocytosis
Protein transport
Transport
   Cellular componentCytoplasm
Golgi apparatus
Membrane
   Coding sequence diversityAlternative splicing
Polymorphism
   DomainCoiled coil
Repeat
   PTMAcetylation
Phosphoprotein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processendocytosis

Inferred from electronic annotation. Source: UniProtKB-KW

intracellular protein transport Ref.1

Traceable author statement. Source: ProtInc

   Cellular componentAP-1 adaptor complex Ref.1

Traceable author statement. Source: ProtInc

extrinsic to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9UMZ2-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9UMZ2-3)

The sequence of this isoform differs from the canonical sequence as follows:
     198-275: Missing.
Isoform 3 (identifier: Q9UMZ2-4)

The sequence of this isoform differs from the canonical sequence as follows:
     198-275: Missing.
     1260-1271: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13141314Synergin gamma
PRO_0000072387

Regions

Domain295 – 38894EH
Region518 – 786269Interaction with A1P1G1 and A1P1G2
Coiled coil115 – 15541 Potential
Motif457 – 4615DFXDF motif 1
Motif690 – 6945DFXDF motif 2
Motif775 – 7795DFXDF motif 3

Amino acid modifications

Modified residue4731Phosphoserine Ref.9
Modified residue5131N6-acetyllysine Ref.12
Modified residue7441N6-acetyllysine Ref.12
Modified residue7521Phosphoserine Ref.9 Ref.6 Ref.8
Modified residue7561Phosphoserine Ref.6
Modified residue8521Phosphoserine
Modified residue8551Phosphoserine
Modified residue9091Phosphoserine Ref.9
Modified residue9191Phosphoserine Ref.9
Modified residue9351Phosphoserine Ref.9
Modified residue9361Phosphoserine
Modified residue10751Phosphoserine Ref.9 Ref.7

Natural variations

Alternative sequence198 – 27578Missing in isoform 2 and isoform 3.
VSP_023015
Alternative sequence1260 – 127112Missing in isoform 3.
VSP_023016
Natural variant401A → G: dbSNP rs12944821.
VAR_051395
Natural variant2221T → A: dbSNP rs12602536.
VAR_051396

Experimental info

Sequence conflict401Missing in AAI17314. Ref.2
Sequence conflict2131S → P in AK126988. Ref.3
Sequence conflict3491K → R in AK126988. Ref.3
Sequence conflict11231E → K in AAD49732. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified April 3, 2007. Version 2.
Checksum: 70C105203EF0BBBF

FASTA1,314140,654
        10         20         30         40         50         60 
MALRPGAGSG GGGAAGAGAG SAGGGGFMFP VAGGIRPPQA GLMPMQQQGF PMVSVMQPNM 

        70         80         90        100        110        120 
QGIMGMNYSS QMSQGPIAMQ AGIPMGPMPA AGMPYLGQAP FLGMRPPGPQ YTPDMQKQFA 

       130        140        150        160        170        180 
EEQQKRFEQQ QKLLEEERKR RQFEEQKQKL RLLSSVKPKT GEKSRDDALE AIKGNLDGFS 

       190        200        210        220        230        240 
RDAKMHPTPA SHPKKPGPSL EEKFLVSCDI STSGQEQIKL NTSEVGHKAL GPGSSKKYPS 

       250        260        270        280        290        300 
LMASNGVAVD GCVSGTTTAE AENTSDQNLS IEESGVGVFP SQDPAQPRMP PWIYNESLVP 

       310        320        330        340        350        360 
DAYKKILETT MTPTGIDTAK LYPILMSSGL PRETLGQIWA LANRTTPGKL TKEELYTVLA 

       370        380        390        400        410        420 
MIAVTQRGVP AMSPDALNQF PAAPIPTLSG FSMTLPTPVS QPTVIPSGPA GSMPLSLGQP 

       430        440        450        460        470        480 
VMGINLVGPV GGAAAQASSG FIPTYPANQV VKPEEDDFQD FQDASKSGSL DDSFSDFQEL 

       490        500        510        520        530        540 
PASSKTSNSQ HGNSAPSLLM PLPGTKALPS MDKYAVFKGI AADKSSENTV PPGDPGDKYS 

       550        560        570        580        590        600 
AFRELEQTAE NKPLGESFAE FRSAGTDDGF TDFKTADSVS PLEPPTKDKT FPPSFPSGTI 

       610        620        630        640        650        660 
QQKQQTQVKN PLNLADLDMF SSVNCSSEKP LSFSAVFSTS KSVSTPQSTG SAATMTALAA 

       670        680        690        700        710        720 
TKTSSLADDF GEFSLFGEYS GLAPVGEQDD FADFMAFSNS SISSEQKPDD KYDALKEEAS 

       730        740        750        760        770        780 
PVPLTSNVGS TVKGGQNSTA ASTKYDVFRQ LSLEGSGLGV EDLKDNTPSG KSDDDFADFH 

       790        800        810        820        830        840 
SSKFSSINSD KSLGEKAVAF RHTKEDSASV KSLDLPSIGG SSVGKEDSED ALSVQFDMKL 

       850        860        870        880        890        900 
ADVGGDLKHV MSDSSLDLPT VSGQHPPAAD IEDLKYAAFG SYSSNFAVST LTSYDWSDRD 

       910        920        930        940        950        960 
DATQGRKLSP FVLSAGSGSP SATSILQKKE TSFGSSENIT MTSLSKVTTF VSEDALPETT 

       970        980        990       1000       1010       1020 
FPALASFKDT IPQTSEQKEY ENRDYKDFTK QDLPTAERSQ EATCPSPASS GASQETPNEC 

      1030       1040       1050       1060       1070       1080 
SDDFGEFQSE KPKISKFDFL VATSQSKMKS SEEMIKSELA TFDLSVQGSH KRSLSLGDKE 

      1090       1100       1110       1120       1130       1140 
ISRSSPSPAL EQPFRDRSNT LNEKPALPVI RDKYKDLTGE VEENERYAYE WQRCLGSALN 

      1150       1160       1170       1180       1190       1200 
VIKKANDTLN GISSSSVCTE VIQSAQGMEY LLGVVEVYRV TKRVELGIKA TAVCSEKLQQ 

      1210       1220       1230       1240       1250       1260 
LLKDIDKVWN NLIGFMSLAT LTPDENSLDF SSCMLRPGIK NAQELACGVC LLNVDSRSRK 

      1270       1280       1290       1300       1310 
EEKPAEEHPK KAFNSETDSF KLAYGGHQYH ASCANFWINC VEPKPPGLVL PDLL 

« Hide

Isoform 2.

Checksum: D22A62B08D8E0B01
Show »

FASTA1,236132,654
Isoform 3.

Checksum: 3D54B7286CED8226
Show »

FASTA1,224131,222

References

« Hide 'large scale' references
[1]"Gamma-synergin: an EH domain-containing protein that interacts with gamma-adaptin."
Page L.J., Sowerby P.J., Lui W.W.Y., Robinson M.S.
J. Cell Biol. 146:993-1004(1999) [PubMed: 10477754] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Tissue: Brain.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3).
Tissue: Brain and Lymph.
[3]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 27-493 (ISOFORM 1).
Tissue: Brain.
[4]"Adaptor gamma ear homology domain conserved in gamma-adaptin and GGA proteins that interact with gamma-synergin."
Takatsu H., Yoshino K., Nakayama K.
Biochem. Biophys. Res. Commun. 271:719-725(2000) [PubMed: 10814529] [Abstract]
Cited for: INTERACTION WITH GGA1; GGA2; GGA3; AP1G1 AND AP1G2.
[5]"EpsinR: an AP1/clathrin interacting protein involved in vesicle trafficking."
Mills I.G., Praefcke G.J.K., Vallis Y., Peter B.J., Olesen L.E., Gallop J.L., Butler P.J.G., Evans P.R., McMahon H.T.
J. Cell Biol. 160:213-222(2003) [PubMed: 12538641] [Abstract]
Cited for: DOMAIN, INTERACTION WITH AP1G1.
[6]"Large-scale characterization of HeLa cell nuclear phosphoproteins."
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-752 AND SER-756, MASS SPECTROMETRY.
Tissue: Epithelium.
[7]"Phosphoproteome of resting human platelets."
Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A.
J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1075, MASS SPECTROMETRY.
Tissue: Platelet.
[8]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-752, MASS SPECTROMETRY.
[9]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473; SER-752; SER-909; SER-919; SER-935 AND SER-1075, MASS SPECTROMETRY.
[10]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473; SER-919; SER-935 AND SER-936, MASS SPECTROMETRY.
[11]"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473; SER-752; SER-852 AND SER-855, MASS SPECTROMETRY.
Tissue: T-cell.
[12]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-513 AND LYS-744, MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

AF169548 mRNA. Translation: AAD49732.1.
BC090930 mRNA. Translation: AAH90930.1.
BC117313 mRNA. Translation: AAI17314.1.
BC143478 mRNA. Translation: AAI43479.1.
AK126988 mRNA. No translation available.
IPIIPI00297931.
IPI00798416.
IPI00827622.
RefSeqNP_001157016.1.
NP_001157017.1.
NP_001157018.1.
NP_001157019.1.
NP_009178.3.
NP_542117.3.
NP_942583.1.
UniGeneHs.655178

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ9UMZ2.

PTM databases

PhosphoSiteQ9UMZ2.

Proteomic databases

PRIDEQ9UMZ2.

Genome annotation databases

EnsemblENST00000339208; ENSP00000343610; ENSG00000006114; Homo sapiens. [Genome view]
ENST00000346661; ENSP00000005279; ENSG00000006114; Homo sapiens. [Genome view]
GeneID11276.
KEGGhsa:11276.
UCSCuc002hoa.1. human.
uc002hoc.1. human.
uc002hod.1. human.

Organism-specific databases

CTD11276.
GeneCardsGC17M032952.
H-InvDBHIX0013748.
HGNCHGNC:557. SYNRG.
HPAHPA023554.
HPA023555.
MIM607291. gene.
PharmGKBPA24847.
GenAtlasSearch...

Phylogenomic databases

HOGENOMQ9UMZ2.
HOVERGENQ9UMZ2.

Gene expression databases

ArrayExpressQ9UMZ2.
BgeeQ9UMZ2.
CleanExHS_AP1GBP1.
GenevestigatorQ9UMZ2.
GermOnlineENSG00000006114. Homo sapiens.

Family and domain databases

InterProIPR011992. EF-Hand_type.
IPR000261. EPS15_homology.
[Graphical view]
Gene3DG3DSA:1.10.238.10. EF-Hand_type. 1 hit.
PROSITEPS50031. EH. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio42921.
SOURCESearch...

Entry information

Entry nameSYNRG_HUMAN
AccessionPrimary (citable) accession number: Q9UMZ2
Secondary accession number(s): B7ZKZ3 expand/collapse secondary AC list , Q17RI2, Q5BKU5, Q6ZT17
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: April 3, 2007
Last modified: November 24, 2009
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

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Human chromosome 17: entries, gene names and cross-references to MIM

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List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents