Reviewed,
UniProtKB/Swiss-Prot Q9UM73 (ALK_HUMAN)
Last modified
October 13, 2009.
Version 97.
History...
Clusters with 100%,
90%,
50% identity |
Documents (8) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: ALK tyrosine kinase receptor EC=2.7.10.1 Alternative name(s): Anaplastic lymphoma kinase CD_antigen=CD246 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Complete proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1620 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Orphan receptor with a tyrosine-protein kinase activity. Appears to play an important role in the normal development and function of the nervous system. Phosphorylates almost exclusively at the first tyrosine of the Y-x-x-x-Y-Y motif. Ref.7 |
| Catalytic activity | ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate. |
| Subunit structure | Homodimer. When bound to ligand. |
| Subcellular location | |
| Tissue specificity | Expressed in brain and CNS. Also expressed in the small intestine and testis, but not in normal lymphoid cells. Ref.1 |
| Post-translational modification | N-glycosylated. Ref.1 |
| Involvement in disease | A chromosomal aberration involving ALK is found in a form of non-Hodgkin lymphoma. Translocation t(2;5)(p23;q35) with NPM1. The resulting chimeric NPM1-ALK protein homodimerize and the kinase becomes constitutively activated. The constitutively active fusion proteins are responsible for 5-10% of non-Hodgkin lymphomas. A chromosomal aberration involving ALK is associated with inflammatory myofibroblastic tumors (IMTs). Translocation t(2;11)(p23;p15) with CARS; translocation t(2;4)(p23;q21) with SEC31A. A chromosomal aberration involving ALK is associated with anaplastic large-cell lymphoma (ALCL). Translocation t(2;17)(p23;q25) with ALO17. |
| Sequence similarities | Belongs to the protein kinase superfamily. Tyr protein kinase family. Insulin receptor subfamily. Contains 1 LDL-receptor class A domain. Contains 2 MAM domains. Contains 1 protein kinase domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PTPRB | P23467 | 1 | EBI-357361,EBI-1265766 | |
| PTPRG | P23470 | 1 | EBI-357361,EBI-2258115 | |
| PTPRJ | Q12913 | 1 | EBI-357361,EBI-2264500 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 18 | 18 | Potential | ||||||
| Chain | 19 – 1620 | 1602 | ALK tyrosine kinase receptor | PRO_0000016740 | |||||
Regions | |||||||||
| Topological domain | 19 – 1038 | 1020 | Extracellular Potential | ||||||
| Transmembrane | 1039 – 1059 | 21 | Potential | ||||||
| Topological domain | 1060 – 1620 | 561 | Cytoplasmic Potential | ||||||
| Domain | 264 – 427 | 164 | MAM 1 | ||||||
| Domain | 437 – 473 | 37 | LDL-receptor class A | ||||||
| Domain | 478 – 636 | 159 | MAM 2 | ||||||
| Domain | 1116 – 1392 | 277 | Protein kinase | ||||||
| Nucleotide binding | 1122 – 1130 | 9 | ATP By similarity | ||||||
| Compositional bias | 816 – 940 | 125 | Gly-rich | ||||||
Sites | |||||||||
| Active site | 1249 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 1150 | 1 | ATP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 211 | 1 | Phosphoserine Ref.12 | ||||||
| Modified residue | 1078 | 1 | Phosphotyrosine Ref.10 Ref.13 | ||||||
| Modified residue | 1092 | 1 | Phosphotyrosine Ref.10 | ||||||
| Modified residue | 1096 | 1 | Phosphotyrosine Ref.10 Ref.13 | ||||||
| Modified residue | 1131 | 1 | Phosphotyrosine Ref.10 | ||||||
| Modified residue | 1278 | 1 | Phosphotyrosine Ref.10 Ref.13 | ||||||
| Modified residue | 1282 | 1 | Phosphotyrosine; by autocatalysis Ref.10 Ref.13 | ||||||
| Modified residue | 1283 | 1 | Phosphotyrosine Ref.13 | ||||||
| Modified residue | 1359 | 1 | Phosphotyrosine Ref.13 | ||||||
| Modified residue | 1507 | 1 | Phosphotyrosine Ref.10 Ref.13 | ||||||
| Modified residue | 1584 | 1 | Phosphotyrosine Ref.10 | ||||||
| Modified residue | 1604 | 1 | Phosphotyrosine Ref.10 | ||||||
| Glycosylation | 169 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 244 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 285 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 324 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 411 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 424 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 445 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 563 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 571 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 627 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 709 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 808 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 863 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 864 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 886 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 986 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Natural variant | 90 | 1 | S → L | VAR_041477 | |||||
| Natural variant | 163 | 1 | V → L | VAR_041478 | |||||
| Natural variant | 296 | 1 | E → Q | VAR_041479 | |||||
| Natural variant | 476 | 1 | V → A: dbSNP rs35093491. Ref.15 | VAR_041480 | |||||
| Natural variant | 560 | 1 | L → F in a breast pleomorphic lobular carcinoma sample; somatic mutation. Ref.15 | VAR_041481 | |||||
| Natural variant | 680 | 1 | T → I: dbSNP rs35228363. Ref.15 | VAR_041482 | |||||
| Natural variant | 704 | 1 | A → T | VAR_041483 | |||||
| Natural variant | 877 | 1 | A → S in an ovarian serous carcinoma sample; somatic mutation. Ref.15 | VAR_041484 | |||||
| Natural variant | 1012 | 1 | T → M | VAR_041485 | |||||
| Natural variant | 1121 | 1 | G → D | VAR_041486 | |||||
| Natural variant | 1274 | 1 | A → T: dbSNP rs45502292. Ref.15 | VAR_041487 | |||||
| Natural variant | 1328 | 1 | M → L | VAR_041488 | |||||
| Natural variant | 1376 | 1 | F → S: dbSNP rs17694720. | VAR_055987 | |||||
| Natural variant | 1416 | 1 | K → N | VAR_041489 | |||||
| Natural variant | 1419 | 1 | E → K | VAR_041490 | |||||
| Natural variant | 1429 | 1 | Q → R | VAR_041491 | |||||
| Natural variant | 1461 | 1 | V → I: dbSNP rs1670283. Ref.5 | VAR_031042 | |||||
| Natural variant | 1491 | 1 | K → R: dbSNP rs1881420. Ref.15 Ref.3 Ref.4 | VAR_031043 | |||||
| Natural variant | 1529 | 1 | D → E: dbSNP rs1881421. Ref.15 Ref.3 Ref.4 | VAR_031044 | |||||
| Natural variant | 1599 | 1 | P → H: dbSNP rs1881423. | VAR_055988 | |||||
Experimental info | |||||||||
| Sequence conflict | 36 | 1 | P → S in AAB71619. Ref.1 | ||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "ALK, the chromosome 2 gene locus altered by the t(2;5) in non-Hodgkin's lymphoma, encodes a novel neural receptor tyrosine kinase that is highly related to leukocyte tyrosine kinase (LTK)." Morris S.W., Naeve C.W., Mathew P., James P.L., Kirstein M.N., Cui X., Witte D.P. Oncogene 14:2175-2188(1997) [PubMed: 9174053] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TISSUE SPECIFICITY, GLYCOSYLATION. |
| [2] | Erratum Morris S.W., Naeve C.W., Mathew P., James P.L., Kirstein M.N., Cui X., Witte D.P. Oncogene 15:2883-2883(1997) |
| [3] | "Molecular characterization of ALK, a receptor tyrosine kinase expressed specifically in the nervous system." Iwahara T., Fujimoto J., Wen D., Cupples R., Bucay N., Arakawa T., Mori S., Ratzkin B., Yamamoto T. Oncogene 14:439-449(1997) [PubMed: 9053841] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS ARG-1491 AND GLU-1529. |
| [4] | Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS ARG-1491 AND GLU-1529. Tissue: Brain. |
| [5] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed: 15815621] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ILE-1461. |
| [6] | "Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma." Morris S.W., Kirstein M.N., Valentine M.B., Dittmer K.G., Shapiro D.N., Saltman D.L., Look A.T. Science 263:1281-1284(1994) [PubMed: 8122112] [Abstract] Cited for: PARTIAL NUCLEOTIDE SEQUENCE [MRNA], CHROMOSOMAL TRANSLOCATION WITH NPM1. |
| [7] | "The cytoplasmic truncated receptor tyrosine kinase ALK homodimer immortalizes and cooperates with ras in cellular transformation." Simonitsch I., Polgar D., Hajek M., Duchek P., Skrzypek B., Fassl S., Lamprecht A., Schmidt G., Krupitza G., Cerni C. FASEB J. 15:1416-1418(2001) [PubMed: 11387242] [Abstract] Cited for: FUNCTION AS AN ONCOGENE. |
| [8] | "Identification of novel fusion partners of ALK, the anaplastic lymphoma kinase, in anaplastic large-cell lymphoma and inflammatory myofibroblastic tumor." Cools J., Wlodarska I., Somers R., Mentens N., Pedeutour F., Maes B., De Wolf-Peeters C., Pauwels P., Hagemeijer A., Marynen P. Genes Chromosomes Cancer 34:354-362(2002) [PubMed: 12112524] [Abstract] Cited for: CHROMOSOMAL TRANSLOCATION WITH ALO17 AND CARS. |
| [9] | "Unique substrate specificity of anaplastic lymphoma kinase (ALK): development of phosphoacceptor peptides for the assay of ALK activity." Donella-Deana A., Marin O., Cesaro L., Gunby R.H., Ferrarese A., Coluccia A.M., Tartari C.J., Mologni L., Scapozza L., Gambacorti-Passerini C., Pinna L.A. Biochemistry 44:8533-8542(2005) [PubMed: 15938644] [Abstract] Cited for: SUBSTRATE SPECIFICITY. |
| [10] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-1078; TYR-1092; TYR-1096; TYR-1131; TYR-1278; TYR-1282; TYR-1507; TYR-1584 AND TYR-1604, MASS SPECTROMETRY. |
| [11] | "Fusion of the SEC31L1 and ALK genes in an inflammatory myofibroblastic tumor." Panagopoulos I., Nilsson T., Domanski H.A., Isaksson M., Lindblom P., Mertens F., Mandahl N. Int. J. Cancer 118:1181-1186(2006) [PubMed: 16161041] [Abstract] Cited for: CHROMOSOMAL TRANSLOCATION WITH SEC31A. |
| [12] | "Phosphoproteome analysis of the human mitotic spindle." Nousiainen M., Sillje H.H.W., Sauer G., Nigg E.A., Koerner R. Proc. Natl. Acad. Sci. U.S.A. 103:5391-5396(2006) [PubMed: 16565220] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-211, MASS SPECTROMETRY. Tissue: Epithelium. |
| [13] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-1078; TYR-1096; TYR-1278; TYR-1282; TYR-1283; TYR-1359 AND TYR-1507, MASS SPECTROMETRY. |
| [14] | "Solution structure of the complex of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK." RIKEN structural genomics initiative (RSGI) Submitted (APR-2008) to the PDB data bank Cited for: STRUCTURE BY NMR OF 1571-1589. |
| [15] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed: 17344846] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] LEU-90; LEU-163; GLN-296; ALA-476; PHE-560; ILE-680; THR-704; SER-877; MET-1012; ASP-1121; THR-1274; LEU-1328; ASN-1416; LYS-1419; ARG-1429; ARG-1491 AND GLU-1529. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| U62540 mRNA. Translation: AAB71619.1. U66559 mRNA. Translation: AAC51104.1. AB209477 mRNA. Translation: BAD92714.1. Different initiation. AC106870 Genomic DNA. Translation: AAX93126.1. AC093756 Genomic DNA. Translation: AAX88892.1. AC074096 Genomic DNA. Translation: AAY15027.1. | |||||||||||||||||||
| IPI | IPI00395632. | ||||||||||||||||||
| RefSeq | NP_004295.2. | ||||||||||||||||||
| UniGene | Hs.654469 | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| |||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | Q9UM73. 61 interactions. | ||||||||||||||||||
| STRING | Q9UM73. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | Q9UM73. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | Q9UM73. | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000389048; ENSP00000373700; ENSG00000171094; Homo sapiens. [Genome view] ENST00000415678; ENSP00000399568; ENSG00000171094; Homo sapiens. [Genome view] ENST00000431873; ENSP00000414027; ENSG00000171094; Homo sapiens. [Genome view] ENST00000438993; ENSP00000403217; ENSG00000171094; Homo sapiens. [Genome view] ENST00000442523; ENSP00000403741; ENSG00000171094; Homo sapiens. [Genome view] ENST00000453137; ENSP00000387488; ENSG00000171094; Homo sapiens. [Genome view] | ||||||||||||||||||
| GeneID | 238. | ||||||||||||||||||
| KEGG | hsa:238. | ||||||||||||||||||
| UCSC | uc002rmy.1. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 238. | ||||||||||||||||||
| GeneCards | GC02M029327. | ||||||||||||||||||
| H-InvDB | HIX0024259. HIX0030037. | ||||||||||||||||||
| HGNC | HGNC:427. ALK. | ||||||||||||||||||
| HPA | HPA010694. | ||||||||||||||||||
| MIM | 105590. gene. | ||||||||||||||||||
| Orphanet | 98841. Anaplastic large cell lymphoma. 635. Neuroblastoma. | ||||||||||||||||||
| PharmGKB | PA24719. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| HOGENOM | Q9UM73. | ||||||||||||||||||
| HOVERGEN | Q9UM73. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| BRENDA | 2.7.10.1. 247. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | Q9UM73. | ||||||||||||||||||
| Bgee | Q9UM73. | ||||||||||||||||||
| CleanEx | HS_ALK. | ||||||||||||||||||
| Genevestigator | Q9UM73. | ||||||||||||||||||
| GermOnline | ENSG00000171094. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR002172. LDL_rcpt_classA_cys-rich. IPR000998. MAM. IPR000719. Prot_kinase_core. IPR017441. Protein_kinase_ATP_BS. IPR002011. Recept_tyr_kinase-II_CS. IPR001245. Tyr_pkinase. IPR008266. Tyr_pkinase_AS. [Graphical view] | ||||||||||||||||||
| Pfam | PF00629. MAM. 1 hit. PF07714. Pkinase_Tyr. 1 hit. [Graphical view] | ||||||||||||||||||
| PRINTS | PR00109. TYRKINASE. | ||||||||||||||||||
| ProDom | PD000001. Prot_kinase. 1 hit. [Graphical view] [Entries sharing at least one domain] | ||||||||||||||||||
| SMART | SM00192. LDLa. 1 hit. SM00219. TyrKc. 1 hit. [Graphical view] | ||||||||||||||||||
| PROSITE | PS01209. LDLRA_1. False negative. PS50068. LDLRA_2. False negative. PS00740. MAM_1. False negative. PS50060. MAM_2. 2 hits. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. PS00239. RECEPTOR_TYR_KIN_II. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other Resources | |||||||||||||||||||
| DrugBank | DB00171. Adenosine triphosphate. | ||||||||||||||||||
| NextBio | 948. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | ALK_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UM73 Secondary accession number(s): Q4ZFX9 Q9Y4K6 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human cell differentiation molecules CD nomenclature of surface proteins of human leucocytes and list of entries |
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| SIMILARITY comments Index of protein domains and families |

Clusters with


