Q9ULK4 (MED23_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 105.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Mediator of RNA polymerase II transcription subunit 23 Alternative name(s): Activator-recruited cofactor 130 kDa component Short name=ARC130 Cofactor required for Sp1 transcriptional activation subunit 3 Short name=CRSP complex subunit 3 Mediator complex subunit 23 Protein sur-2 homolog Short name=hSur-2 Transcriptional coactivator CRSP130 Vitamin D3 receptor-interacting protein complex 130 kDa component Short name=DRIP130 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1368 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Required for transcriptional activation subsequent to the assembly of the preinitiation complex By similarity. Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for transcriptional activation by adenovirus E1A protein. Required for ELK1-dependent transcriptional activation in response to activated Ras signaling. Ref.2 Ref.12 Ref.16 |
| Subunit structure | Interacts with ELK1 By similarity. Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Interacts with CEBPB, CTNNB1, and GLI3. Interacts with the adenovirus E1A protein. Ref.1 Ref.2 Ref.3 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16 |
| Subcellular location | Nucleus Probable. |
| Involvement in disease | Mental retardation, autosomal recessive 18 (MRT18) [MIM:614249]: A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptative behavior and manifested during the developmental period. |
| Sequence similarities | Belongs to the Mediator complex subunit 23 family. |
| Sequence caution | The sequence AAD12724.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAD31729.1 differs from that shown. Reason: Frameshift at positions 945 and 950. The sequence BAA86530.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing |
| Disease | Disease mutation Mental retardation |
| Molecular function | Activator |
| Technical term | Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of transcription from RNA polymerase II promoter Traceable author statement Ref.3. Source: ProtInc transcription initiation from RNA polymerase II promoterTraceable author statement. Source: Reactome |
| Cellular_component | mediator complex Inferred from electronic annotation. Source: Compara transcription factor complexInferred from direct assay Ref.3. Source: MGI |
| Molecular_function | transcription coactivator activity Traceable author statement Ref.3. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] Note: Experimental confirmation may be lacking for some isoforms. | ||||||
| Isoform 1 (identifier: Q9ULK4-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9ULK4-2) The sequence of this isoform differs from the canonical sequence as follows: 292-292: Q → QTLNIAQ 870-880: AMRSHEGNEAQ → VRINTFLSLFS 881-1368: Missing. | ||||||
| Isoform 3 (identifier: Q9ULK4-3) The sequence of this isoform differs from the canonical sequence as follows: 292-292: Q → QTLNIAQ 1360-1368: Missing. | ||||||
| Isoform 4 (identifier: Q9ULK4-4) The sequence of this isoform differs from the canonical sequence as follows: 1360-1368: Missing. | ||||||
| Isoform 5 (identifier: Q9ULK4-5) The sequence of this isoform differs from the canonical sequence as follows: 1361-1368: PVSLPVTQ → DTLT |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1368 | 1368 | Mediator of RNA polymerase II transcription subunit 23 | PRO_0000079358 | |||||
Natural variations | |||||||||
| Alternative sequence | 292 | 1 | Q → QTLNIAQ in isoform 2 and isoform 3. | VSP_004034 | |||||
| Alternative sequence | 870 – 880 | 11 | AMRSHEGNEAQ → VRINTFLSLFS in isoform 2. | VSP_004036 | |||||
| Alternative sequence | 881 – 1368 | 488 | Missing in isoform 2. | VSP_004037 | |||||
| Alternative sequence | 1360 – 1368 | 9 | Missing in isoform 3 and isoform 4. | VSP_004035 | |||||
| Alternative sequence | 1361 – 1368 | 8 | PVSLPVTQ → DTLT in isoform 5. | VSP_028380 | |||||
| Natural variant | 617 | 1 | P → Q in MRT18; specifically impairs the response of JUN and FOS immediate early genes to serum mitogens by altering the interaction between enhancer-bound transcription factors (TCF7L2 and ELK1 respectively) and Mediator complex. Ref.18 | VAR_066596 | |||||
Experimental info | |||||||||
| Sequence conflict | 59 | 1 | C → W in AAH60759. Ref.8 | ||||||
| Sequence conflict | 131 | 1 | Y → N in AAD31729. Ref.1 | ||||||
| Sequence conflict | 208 | 1 | F → V in AAD30202. Ref.2 | ||||||
| Sequence conflict | 230 | 1 | V → E in AAD30202. Ref.2 | ||||||
| Sequence conflict | 464 | 1 | N → H in AAD30202. Ref.2 | ||||||
| Sequence conflict | 488 | 1 | F → V in AAD30202. Ref.2 | ||||||
| Sequence conflict | 507 | 1 | I → L in AAD30202. Ref.2 | ||||||
| Sequence conflict | 518 | 1 | G → A in AAD30202. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex." Rachez C., Lemon B.D., Suldan Z., Bromleigh V., Gamble M., Naeaer A.M., Erdjument-Bromage H., Tempst P., Freedman L.P. Nature 398:824-828(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), PROTEIN SEQUENCE OF 254-280; 1317-1326 AND 1331-1337, IDENTIFICATION IN ARC COMPLEX. Tissue: Cervix carcinoma. |
| [2] | "Mammalian Srb/Mediator complex is targeted by adenovirus E1A protein." Boyer T.G., Martin M.E.D., Lees E., Ricciardi R.P., Berk A.J. Nature 399:276-279(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5), FUNCTION, INTERACTION WITH E1A AND CDK8. |
| [3] | "The transcriptional cofactor complex CRSP is required for activity of the enhancer-binding protein Sp1." Ryu S., Zhou S., Ladurner A.G., Tjian R. Nature 397:446-450(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), IDENTIFICATION IN THE CRSP COMPLEX. |
| [4] | "Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Kikuno R., Hirosawa M., Nomura N., Ohara O. DNA Res. 6:337-345(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [5] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Testis. |
| [6] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Placenta. |
| [9] | "Composite co-activator ARC mediates chromatin-directed transcriptional activation." Naeaer A.M., Beaurang P.A., Zhou S., Abraham S., Solomon W.B., Tjian R. Nature 398:828-832(1999) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE ARC COMPLEX, PROTEIN SEQUENCE OF 465-473 AND 1302-1311. |
| [10] | "TFIIH is negatively regulated by cdk8-containing mediator complexes." Akoulitchev S., Chuikov S., Reinberg D. Nature 407:102-106(2000) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MED6. |
| [11] | "The TRAP/Mediator coactivator complex interacts directly with estrogen receptors alpha and beta through the TRAP220 subunit and directly enhances estrogen receptor function in vitro." Kang Y.K., Guermah M., Yuan C.-X., Roeder R.G. Proc. Natl. Acad. Sci. U.S.A. 99:2642-2647(2002) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE MEDIATOR COMPLEX. |
| [12] | "Ras induces mediator complex exchange on C/EBP beta." Mo X., Kowenz-Leutz E., Xu H., Leutz A. Mol. Cell 13:241-250(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH CEBPB. |
| [13] | "A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology." Sato S., Tomomori-Sato C., Parmely T.J., Florens L., Zybailov B., Swanson S.K., Banks C.A.S., Jin J., Cai Y., Washburn M.P., Conaway J.W., Conaway R.C. Mol. Cell 14:685-691(2004) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE MEDIATOR COMPLEX. |
| [14] | "MED1/TRAP220 exists predominantly in a TRAP/Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription." Zhang X., Krutchinsky A., Fukuda A., Chen W., Yamamura S., Chait B.T., Roeder R.G. Mol. Cell 19:89-100(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MED1 AND MED10, IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE MEDIATOR COMPLEX, ASSOCIATION OF THE MEDIATOR COMPLEX WITH RNA POLYMERASE II. |
| [15] | "Mediator modulates Gli3-dependent Sonic hedgehog signaling." Zhou H., Kim S., Ishii S., Boyer T.G. Mol. Cell. Biol. 26:8667-8682(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CDK8; CTNNB1 AND GLI3. |
| [16] | "Human Mediator enhances basal transcription by facilitating recruitment of transcription factor IIB during preinitiation complex assembly." Baek H.J., Kang Y.K., Roeder R.G. J. Biol. Chem. 281:15172-15181(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH MED1 AND MED10. |
| [17] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [18] | "MED23 mutation links intellectual disability to dysregulation of immediate early gene expression." Hashimoto S., Boissel S., Zarhrate M., Rio M., Munnich A., Egly J.M., Colleaux L. Science 333:1161-1163(2011) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT MRT18 GLN-617, CHARACTERIZATION OF VARIANT MRT18 GLN-617. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF105332 mRNA. Translation: AAD31729.1. Frameshift. AF135022 mRNA. Translation: AAD30202.1. AF104255 mRNA. Translation: AAD12724.1. Different initiation. AB033042 mRNA. Translation: BAA86530.1. Different initiation. AL136776 mRNA. Translation: CAB66710.1. AL121575 Genomic DNA. Translation: CAB92072.1. AL121575 Genomic DNA. Translation: CAB92073.1. AL121575 Genomic DNA. Translation: CAI23319.1. AL121575 Genomic DNA. Translation: CAI23320.1. CH471051 Genomic DNA. Translation: EAW48052.1. BC060759 mRNA. Translation: AAH60759.1. |
| IPI | IPI00413272. IPI00472333. IPI00646226. IPI00844220. IPI00867654. |
| RefSeq | NP_001257450.1. NM_001270521.1. NP_001257451.1. NM_001270522.1. NP_004821.2. NM_004830.3. NP_057063.2. NM_015979.3. |
| UniGene | Hs.29679. |
3D structure databases | |
| ProteinModelPortal | Q9ULK4. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-31461N. |
| IntAct | Q9ULK4. 16 interactions. |
| MINT | MINT-4719443. |
PTM databases | |
| PhosphoSite | Q9ULK4. |
Polymorphism databases | |
| DMDM | 28558074. |
Proteomic databases | |
| PaxDb | Q9ULK4. |
| PRIDE | Q9ULK4. |
Protocols and materials databases | |
| DNASU | 9439. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000354577; ENSP00000346588; ENSG00000112282. ENST00000368053; ENSP00000357032; ENSG00000112282. ENST00000368060; ENSP00000357039; ENSG00000112282. ENST00000368068; ENSP00000357047; ENSG00000112282. |
| GeneID | 9439. |
| KEGG | hsa:9439. |
| UCSC | uc003qcq.3. human. uc003qcs.1. human. uc003qct.1. human. |
Organism-specific databases | |
| CTD | 9439. |
| GeneCards | GC06M131895. |
| HGNC | HGNC:2372. MED23. |
| MIM | 605042. gene. 614249. phenotype. |
| neXtProt | NX_Q9ULK4. |
| Orphanet | 88616. Autosomal recessive nonsyndromic intellectual deficit. |
| PharmGKB | PA162395499. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG305557. |
| HOVERGEN | HBG051122. |
| KO | K15166. |
Enzyme and pathway databases | |
| Reactome | REACT_111045. Developmental Biology. REACT_71. Gene Expression. |
Gene expression databases | |
| ArrayExpress | Q9ULK4. |
| Bgee | Q9ULK4. |
| Genevestigator | Q9ULK4. |
| GermOnline | ENSG00000112282. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR021629. Mediator_Med23. [Graphical view] |
| Pfam | PF11573. Med23. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| BindingDB | Q9ULK4. |
| ChEMBL | CHEMBL4146. |
| ChiTaRS | MED23. human. |
| GenomeRNAi | 9439. |
| NextBio | 35344. |
| SOURCE | Search... |
Entry information
| Entry name | MED23_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9ULK4 Secondary accession number(s): O95403 Q9Y667 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
