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Q9UKW6

- ELF5_HUMAN

UniProt

Q9UKW6 - ELF5_HUMAN

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Protein
ETS-related transcription factor Elf-5
Gene
ELF5, ESE2
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Transcriptionally activator that may play a role in regulating the later stages of keratinocytes terminal differentiation.1 Publication
Isoform 2 binds to DNA sequences containing the consensus nucleotide core sequence GGA[AT]. Transcriptionally activates SPRR2A and the parotid gland-specific PSP promoters.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi173 – 25482ETS
Add
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding RNA polymerase II transcription factor activity Source: RefGenome

GO - Biological processi

  1. cell differentiation Source: RefGenome
  2. cell proliferation Source: ProtInc
  3. ectoderm development Source: Ensembl
  4. mammary gland epithelial cell differentiation Source: Ensembl
  5. regulation of transcription from RNA polymerase II promoter Source: RefGenome
  6. transcription from RNA polymerase II promoter Source: ProtInc
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ETS-related transcription factor Elf-5
Alternative name(s):
E74-like factor 5
Epithelium-restricted ESE-1-related Ets factor
Epithelium-specific Ets transcription factor 2
Short name:
ESE-2
Gene namesi
Name:ELF5
Synonyms:ESE2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 11

Organism-specific databases

HGNCiHGNC:3320. ELF5.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. nucleus Source: RefGenome
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA27748.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 265265ETS-related transcription factor Elf-5
PRO_0000204092Add
BLAST

Proteomic databases

PRIDEiQ9UKW6.

Expressioni

Tissue specificityi

Expressed exclusively in tissues with a high content of epithelial cells. Highly expressed in salivary gland, mammary gland, kidney and prostate. Weakly expressed in placenta and lung. Isoform 1 and isoform 2 are differentially expressed in different tissues. In the kidney, only isoform 1 was expressed, while prostate expressed both isoforms, with levels of isoform 2 being higher. Expression is up-regulated during keratinocyte differentiation. Several epithelial carcinoma cell lines showed lack of expression.2 Publications

Gene expression databases

ArrayExpressiQ9UKW6.
BgeeiQ9UKW6.
CleanExiHS_ELF5.
GenevestigatoriQ9UKW6.

Interactioni

Protein-protein interaction databases

BioGridi108316. 8 interactions.
IntActiQ9UKW6. 6 interactions.
MINTiMINT-1448100.
STRINGi9606.ENSP00000311010.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi175 – 18410
Turni186 – 1883
Beta strandi194 – 1974
Turni198 – 2014
Beta strandi202 – 2043
Helixi208 – 21811
Helixi226 – 23914
Beta strandi240 – 2434
Beta strandi246 – 2538

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WWXNMR-A172-265[»]
ProteinModelPortaliQ9UKW6.
SMRiQ9UKW6. Positions 174-265.

Miscellaneous databases

EvolutionaryTraceiQ9UKW6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini43 – 12987PNT
Add
BLAST

Domaini

The PNT domain acts as a transcriptional activator By similarity.

Sequence similaritiesi

Belongs to the ETS family.

Phylogenomic databases

eggNOGiNOG296414.
HOGENOMiHOG000232188.
HOVERGENiHBG074143.
InParanoidiQ9UKW6.
KOiK17101.
OMAiIVIVATC.
OrthoDBiEOG7M0NRR.
PhylomeDBiQ9UKW6.
TreeFamiTF318679.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.150.50. 1 hit.
InterProiIPR000418. Ets_dom.
IPR003118. Pointed_dom.
IPR013761. SAM/pointed.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00178. Ets. 1 hit.
PF02198. SAM_PNT. 1 hit.
[Graphical view]
PRINTSiPR00454. ETSDOMAIN.
SMARTiSM00413. ETS. 1 hit.
SM00251. SAM_PNT. 1 hit.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 1 hit.
PROSITEiPS00346. ETS_DOMAIN_2. 1 hit.
PS50061. ETS_DOMAIN_3. 1 hit.
PS51433. PNT. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9UKW6-1) [UniParc]FASTAAdd to Basket

Also known as: ESE-2a

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MPSLPHSHRV MLDSVTHSTF LPNASFCDPL MSWTDLFSNE EYYPAFEHQT    50
ACDSYWTSVH PEYWTKRHVW EWLQFCCDQY KLDTNCISFC NFNISGLQLC 100
SMTQEEFVEA AGLCGEYLYF ILQNIRTQGY SFFNDAEESK ATIKDYADSN 150
CLKTSGIKSQ DCHSHSRTSL QSSHLWEFVR DLLLSPEENC GILEWEDREQ 200
GIFRVVKSEA LAKMWGQRKK NDRMTYEKLS RALRYYYKTG ILERVDRRLV 250
YKFGKNAHGW QEDKL 265
Length:265
Mass (Da):31,263
Last modified:July 5, 2005 - v2
Checksum:i43821A79A45768FE
GO
Isoform 2 (identifier: Q9UKW6-2) [UniParc]FASTAAdd to Basket

Also known as: ESE-2b

The sequence of this isoform differs from the canonical sequence as follows:
     1-10: Missing.

Show »
Length:255
Mass (Da):30,121
Checksum:iAE61C5B178ECB555
GO
Isoform 3 (identifier: Q9UKW6-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-10: Missing.
     130-148: YSFFNDAEESKATIKDYAD → QCSEGQTSRGGTRIRTKQL
     149-265: Missing.

Note: No experimental confirmation available.

Show »
Length:138
Mass (Da):16,121
Checksum:iCD6912714A9AF817
GO
Isoform 4 (identifier: Q9UKW6-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-10: Missing.
     51-146: ACDSYWTSVH...EESKATIKDY → D

Show »
Length:160
Mass (Da):18,866
Checksum:i511FDAE3E4E6A31F
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 1010Missing in isoform 2, isoform 3 and isoform 4.
VSP_014510
Alternative sequencei51 – 14696ACDSY…TIKDY → D in isoform 4.
VSP_054662Add
BLAST
Alternative sequencei130 – 14819YSFFN…KDYAD → QCSEGQTSRGGTRIRTKQL in isoform 3.
VSP_014511Add
BLAST
Alternative sequencei149 – 265117Missing in isoform 3.
VSP_014512Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti250 – 2501V → M in AAD22960. 1 Publication
Sequence conflicti250 – 2501V → M in AAD22961. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF049703 mRNA. Translation: AAC79755.1.
DQ123839 mRNA. Translation: AAZ98848.1.
AF115402 mRNA. Translation: AAD22960.1.
AF115403 mRNA. Translation: AAD22961.1.
AK074633 mRNA. Translation: BAC11101.1.
AK290817 mRNA. Translation: BAF83506.1.
AL137224 Genomic DNA. No translation available.
CH471064 Genomic DNA. Translation: EAW68169.1.
BC029743 mRNA. Translation: AAH29743.1.
CCDSiCCDS58129.1. [Q9UKW6-4]
CCDS7892.1. [Q9UKW6-1]
CCDS7893.1. [Q9UKW6-2]
RefSeqiNP_001230009.1. NM_001243080.1. [Q9UKW6-4]
NP_001230010.1. NM_001243081.1.
NP_001413.1. NM_001422.3. [Q9UKW6-2]
NP_938195.1. NM_198381.1. [Q9UKW6-1]
UniGeneiHs.11713.

Genome annotation databases

EnsembliENST00000257832; ENSP00000257832; ENSG00000135374. [Q9UKW6-2]
ENST00000312319; ENSP00000311010; ENSG00000135374. [Q9UKW6-1]
ENST00000429939; ENSP00000407589; ENSG00000135374.
ENST00000532417; ENSP00000436386; ENSG00000135374. [Q9UKW6-3]
GeneIDi2001.
KEGGihsa:2001.
UCSCiuc001mvo.1. human. [Q9UKW6-1]
uc001mvq.2. human. [Q9UKW6-3]

Polymorphism databases

DMDMi68565549.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF049703 mRNA. Translation: AAC79755.1 .
DQ123839 mRNA. Translation: AAZ98848.1 .
AF115402 mRNA. Translation: AAD22960.1 .
AF115403 mRNA. Translation: AAD22961.1 .
AK074633 mRNA. Translation: BAC11101.1 .
AK290817 mRNA. Translation: BAF83506.1 .
AL137224 Genomic DNA. No translation available.
CH471064 Genomic DNA. Translation: EAW68169.1 .
BC029743 mRNA. Translation: AAH29743.1 .
CCDSi CCDS58129.1. [Q9UKW6-4 ]
CCDS7892.1. [Q9UKW6-1 ]
CCDS7893.1. [Q9UKW6-2 ]
RefSeqi NP_001230009.1. NM_001243080.1. [Q9UKW6-4 ]
NP_001230010.1. NM_001243081.1.
NP_001413.1. NM_001422.3. [Q9UKW6-2 ]
NP_938195.1. NM_198381.1. [Q9UKW6-1 ]
UniGenei Hs.11713.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1WWX NMR - A 172-265 [» ]
ProteinModelPortali Q9UKW6.
SMRi Q9UKW6. Positions 174-265.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 108316. 8 interactions.
IntActi Q9UKW6. 6 interactions.
MINTi MINT-1448100.
STRINGi 9606.ENSP00000311010.

Polymorphism databases

DMDMi 68565549.

Proteomic databases

PRIDEi Q9UKW6.

Protocols and materials databases

DNASUi 2001.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000257832 ; ENSP00000257832 ; ENSG00000135374 . [Q9UKW6-2 ]
ENST00000312319 ; ENSP00000311010 ; ENSG00000135374 . [Q9UKW6-1 ]
ENST00000429939 ; ENSP00000407589 ; ENSG00000135374 .
ENST00000532417 ; ENSP00000436386 ; ENSG00000135374 . [Q9UKW6-3 ]
GeneIDi 2001.
KEGGi hsa:2001.
UCSCi uc001mvo.1. human. [Q9UKW6-1 ]
uc001mvq.2. human. [Q9UKW6-3 ]

Organism-specific databases

CTDi 2001.
GeneCardsi GC11M034500.
HGNCi HGNC:3320. ELF5.
MIMi 605169. gene.
neXtProti NX_Q9UKW6.
PharmGKBi PA27748.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG296414.
HOGENOMi HOG000232188.
HOVERGENi HBG074143.
InParanoidi Q9UKW6.
KOi K17101.
OMAi IVIVATC.
OrthoDBi EOG7M0NRR.
PhylomeDBi Q9UKW6.
TreeFami TF318679.

Miscellaneous databases

EvolutionaryTracei Q9UKW6.
GeneWikii ELF5.
GenomeRNAii 2001.
NextBioi 8095.
PROi Q9UKW6.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9UKW6.
Bgeei Q9UKW6.
CleanExi HS_ELF5.
Genevestigatori Q9UKW6.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
1.10.150.50. 1 hit.
InterProi IPR000418. Ets_dom.
IPR003118. Pointed_dom.
IPR013761. SAM/pointed.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00178. Ets. 1 hit.
PF02198. SAM_PNT. 1 hit.
[Graphical view ]
PRINTSi PR00454. ETSDOMAIN.
SMARTi SM00413. ETS. 1 hit.
SM00251. SAM_PNT. 1 hit.
[Graphical view ]
SUPFAMi SSF47769. SSF47769. 1 hit.
PROSITEi PS00346. ETS_DOMAIN_2. 1 hit.
PS50061. ETS_DOMAIN_3. 1 hit.
PS51433. PNT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A novel transcription factor, ELF5, belongs to the ELF subfamily of ETS genes and maps to human chromosome 11p13-15, a region subject to LOH and rearrangement in human carcinoma cell lines."
    Zhou J., Ng A.Y., Tymms M.J., Jermiin L.S., Seth A.K., Thomas R.S., Kola I.
    Oncogene 17:2719-2732(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 4), TISSUE SPECIFICITY.
    Tissue: Lung.
  2. "Characterization of ESE-2, a novel ESE-1-related Ets transcription factor that is restricted to glandular epithelium and differentiated keratinocytes."
    Oettgen P., Kas K., Dube A., Gu X., Grall F., Thamrongsak U., Akbarali Y., Finger E., Boltax J., Endress G., Munger K., Kunsch C., Libermann T.A.
    J. Biol. Chem. 274:29439-29452(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), FUNCTION, TISSUE SPECIFICITY, ALTERNATIVE SPLICING.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3).
    Tissue: Kidney.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Urinary bladder.

Entry informationi

Entry nameiELF5_HUMAN
AccessioniPrimary (citable) accession number: Q9UKW6
Secondary accession number(s): A6XAE6
, A8K452, O95175, Q8N2K9, Q96QY3, Q9UKW5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: July 5, 2005
Last modified: September 3, 2014
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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