Q9UKK3 (PARP4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 129.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Poly [ADP-ribose] polymerase 4 Short name=PARP-4 EC=2.4.2.30 Alternative name(s): 193 kDa vault protein ADP-ribosyltransferase diphtheria toxin-like 4 Short name=ARTD4 PARP-related/IalphaI-related H5/proline-rich Short name=PH5P Vault poly(ADP-ribose) polymerase Short name=VPARP | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1724 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Catalytic activity | NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. |
| Subunit structure | Component of the vault ribonucleoprotein particle, at least composed of MVP, PARP4 and one or more vault RNAs (vRNAs). Binds to MVP. Associates with TEP1. |
| Subcellular location | Cytoplasm. Nucleus. Cytoplasm › cytoskeleton › spindle. Note: Also found in the nucleus, associated with mitotic spindles. |
| Tissue specificity | Widely expressed; the highest levels are in the kidney; also detected in heart, placenta, lung, liver, skeletal muscle, spleen, leukocytes and pancreas. |
| Sequence similarities | Contains 1 BRCT domain. Contains 1 PARP alpha-helical domain. Contains 1 PARP catalytic domain. Contains 1 VIT domain. Contains 1 VWFA domain. |
| Sequence caution | The sequence BAA11494.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ORF | Q9Q2G4 | 3 | EBI-2623021,EBI-6248094 | From a different organism. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1724 | 1724 | Poly [ADP-ribose] polymerase 4 | PRO_0000211330 | |||||
Regions | |||||||||
| Domain | 1 – 94 | 94 | BRCT | ||||||
| Domain | 242 – 370 | 129 | PARP alpha-helical | ||||||
| Domain | 369 – 573 | 205 | PARP catalytic | ||||||
| Domain | 607 – 735 | 129 | VIT | ||||||
| Domain | 876 – 1046 | 171 | VWFA | ||||||
| Region | 1562 – 1724 | 163 | Interaction with the major vault protein | ||||||
| Motif | 19 – 25 | 7 | Nuclear localization signal Potential | ||||||
| Motif | 1237 – 1249 | 13 | Nuclear localization signal Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 101 | 1 | Phosphothreonine Ref.8 | ||||||
| Modified residue | 1236 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1335 | 1 | Phosphoserine Ref.8 Ref.9 | ||||||
| Modified residue | 1504 | 1 | Phosphoserine Ref.8 | ||||||
Natural variations | |||||||||
| Natural variant | 81 | 1 | I → V. Corresponds to variant rs35200240 [ dbSNP | Ensembl ]. | VAR_056645 | |||||
| Natural variant | 122 | 1 | S → N. Corresponds to variant rs9578751 [ dbSNP | Ensembl ]. | VAR_056646 | |||||
| Natural variant | 215 | 1 | F → Y. Corresponds to variant rs9318600 [ dbSNP | Ensembl ]. | VAR_056647 | |||||
| Natural variant | 792 | 1 | P → L. Corresponds to variant rs4986818 [ dbSNP | Ensembl ]. | VAR_056648 | |||||
| Natural variant | 873 | 1 | S → N. Ref.2 Ref.3 Corresponds to variant rs7140044 [ dbSNP | Ensembl ]. | VAR_056649 | |||||
| Natural variant | 899 | 1 | A → T. Ref.1 Corresponds to variant rs2275660 [ dbSNP | Ensembl ]. | VAR_056650 | |||||
| Natural variant | 991 | 1 | K → R. Corresponds to variant rs34689435 [ dbSNP | Ensembl ]. | VAR_056651 | |||||
| Natural variant | 1012 | 1 | V → I. Corresponds to variant rs9581043 [ dbSNP | Ensembl ]. | VAR_056652 | |||||
| Natural variant | 1253 | 1 | S → T. Corresponds to variant rs4986822 [ dbSNP | Ensembl ]. | VAR_056653 | |||||
| Natural variant | 1265 | 1 | G → A. Ref.2 Ref.3 Corresponds to variant rs1050110 [ dbSNP | Ensembl ]. | VAR_016090 | |||||
| Natural variant | 1280 | 1 | G → R. Ref.2 Ref.3 Corresponds to variant rs13428 [ dbSNP | Ensembl ]. | VAR_016091 | |||||
Experimental info | |||||||||
| Sequence conflict | 519 | 1 | S → P in AAD47250. Ref.1 | ||||||
| Sequence conflict | 897 | 1 | Q → E in AAC62491. Ref.2 | ||||||
| Sequence conflict | 897 | 1 | Q → E in BAA11494. Ref.3 | ||||||
| Sequence conflict | 936 | 1 | M → A in AAC62491. Ref.2 | ||||||
| Sequence conflict | 936 | 1 | M → A in BAA11494. Ref.3 | ||||||
| Sequence conflict | 936 | 1 | M → T in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1065 | 1 | V → A in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1065 | 1 | V → A in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1080 | 1 | L → R in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1080 | 1 | L → R in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1080 | 1 | L → R in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1108 | 1 | R → C in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1108 | 1 | R → C in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1108 | 1 | R → C in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1328 | 1 | P → T in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1328 | 1 | P → T in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1328 | 1 | P → T in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1331 | 1 | A → T in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1331 | 1 | A → T in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1331 | 1 | A → T in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1394 | 1 | S → A in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1394 | 1 | S → A in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1394 | 1 | S → A in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1459 | 1 | S → Y in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1459 | 1 | S → Y in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1459 | 1 | S → Y in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1550 | 1 | L → P in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1550 | 1 | L → P in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1550 | 1 | L → P in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1555 | 1 | V → L in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1564 | 1 | I → T in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1564 | 1 | I → T in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1564 | 1 | I → T in BAA11494. Ref.3 | ||||||
| Sequence conflict | 1656 | 1 | A → P in AAD47250. Ref.1 | ||||||
| Sequence conflict | 1656 | 1 | A → P in AAC62491. Ref.2 | ||||||
| Sequence conflict | 1656 | 1 | A → P in BAA11494. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The 193 kDa vault protein, VPARP, is a novel poly(ADP-ribose) polymerase." Kickhoefer V.A., Siva A.C., Kedersha N.L., Inman E.M., Ruland C., Streuli M., Rome L.H. J. Cell Biol. 146:917-928(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 306-319, VARIANT THR-899. |
| [2] | "Identification of a novel gene (ADPRTL1) encoding a potential poly(ADP-ribosyl)transferase protein." Still I.H., Vince P., Cowell J.K. Genomics 62:533-536(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS ASN-873; ALA-1265 AND ARG-1280. Tissue: Thymus. |
| [3] | "Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1." Nagase T., Seki N., Ishikawa K., Tanaka A., Nomura N. DNA Res. 3:17-24(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS ASN-873; ALA-1265 AND ARG-1280. Tissue: Bone marrow. |
| [4] | Ohara O., Nagase T., Kikuno R., Nomura N. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION. |
| [5] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The nuclear protein PH5P of the inter-alpha-inhibitor superfamily: a missing link between poly(ADP-ribose)polymerase and the inter-alpha-inhibitor family and a novel actor of DNA repair?" Jean L., Risler J.-L., Nagase T., Coulouarn C., Nomura N., Salier J.-P. FEBS Lett. 446:6-8(1999) [PubMed] [Europe PMC] [Abstract] Cited for: DISCUSSION OF SEQUENCE. |
| [7] | "Vaults and telomerase share a common subunit, TEP1." Kickhoefer V.A., Stephen A.G., Harrington L., Robinson M.O., Rome L.H. J. Biol. Chem. 274:32712-32717(1999) [PubMed] [Europe PMC] [Abstract] Cited for: ASSOCIATION WITH TEP1. |
| [8] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-101; SER-1236; SER-1335 AND SER-1504, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1335, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Toward a unified nomenclature for mammalian ADP-ribosyltransferases." Hottiger M.O., Hassa P.O., Luscher B., Schuler H., Koch-Nolte F. Trends Biochem. Sci. 35:208-219(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NOMENCLATURE. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF158255 mRNA. Translation: AAD47250.1. AF057160 mRNA. Translation: AAC62491.1. D79999 mRNA. Translation: BAA11494.2. Different initiation. AL359763 Genomic DNA. Translation: CAI12394.1. |
| IPI | IPI00296909. |
| RefSeq | NP_006428.2. NM_006437.3. |
| UniGene | Hs.741173. |
3D structure databases | |
| ProteinModelPortal | Q9UKK3. |
| SMR | Q9UKK3. Positions 4-94, 207-564. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9UKK3. 12 interactions. |
| MINT | MINT-6768840. |
| STRING | 9606.ENSP00000371419. |
PTM databases | |
| PhosphoSite | Q9UKK3. |
Polymorphism databases | |
| DMDM | 308153574. |
Proteomic databases | |
| PaxDb | Q9UKK3. |
| PeptideAtlas | Q9UKK3. |
| PRIDE | Q9UKK3. |
Protocols and materials databases | |
| DNASU | 143. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000381989; ENSP00000371419; ENSG00000102699. |
| GeneID | 143. |
| KEGG | hsa:143. |
| UCSC | uc001upl.3. human. |
Organism-specific databases | |
| CTD | 143. |
| GeneCards | GC13M024995. |
| H-InvDB | HIX0019099. |
| HGNC | HGNC:271. PARP4. |
| HPA | HPA011739. |
| MIM | 607519. gene. |
| neXtProt | NX_Q9UKK3. |
| PharmGKB | PA24591. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG2304. |
| HOGENOM | HOG000139369. |
| HOVERGEN | HBG053515. |
| InParanoid | Q9UKK3. |
| KO | K10798. |
| OMA | GKCMDLH. |
| OrthoDB | EOG4X97GF. |
| PhylomeDB | Q9UKK3. |
Enzyme and pathway databases | |
| BRENDA | 2.4.2.30. 2681. |
Gene expression databases | |
| Bgee | Q9UKK3. |
| CleanEx | HS_PARP4. |
| Genevestigator | Q9UKK3. |
| GermOnline | ENSG00000102699. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.20.142.10. 1 hit. |
| InterPro | IPR001357. BRCT_dom. IPR012317. Poly(ADP-ribose)pol_cat_dom. IPR004102. Poly(ADP-ribose)pol_reg_dom. IPR013694. VIT. IPR002035. VWF_A. [Graphical view] |
| Pfam | PF00533. BRCT. 1 hit. PF00644. PARP. 1 hit. PF08487. VIT. 1 hit. PF00092. VWA. 1 hit. [Graphical view] |
| SMART | SM00292. BRCT. 1 hit. SM00609. VIT. 1 hit. SM00327. VWA. 1 hit. [Graphical view] |
| SUPFAM | SSF52113. BRCT. 1 hit. SSF47587. PARP_reg. 1 hit. |
| PROSITE | PS50172. BRCT. 1 hit. PS51060. PARP_ALPHA_HD. 1 hit. PS51059. PARP_CATALYTIC. 1 hit. PS51468. VIT. 1 hit. PS50234. VWFA. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL6142. |
| ChiTaRS | PARP4. human. |
| GenomeRNAi | 143. |
| NextBio | 569. |
| SOURCE | Search... |
Entry information
| Entry name | PARP4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UKK3 Secondary accession number(s): O75903 Q9H1M6 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
