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Protein

DnaJ homolog subfamily C member 12

Gene

DNAJC12

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

Chaperone

Names & Taxonomyi

Protein namesi
Recommended name:
DnaJ homolog subfamily C member 12
Alternative name(s):
J domain-containing protein 1
Gene namesi
Name:DNAJC12
Synonyms:JDP1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 10

Organism-specific databases

HGNCiHGNC:28908. DNAJC12.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134931354.

Polymorphism and mutation databases

BioMutaiDNAJC12.
DMDMi28201819.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198DnaJ homolog subfamily C member 12PRO_0000071066Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineCombined sources
Modified residuei160 – 1601PhosphoserineBy similarity
Modified residuei166 – 1661PhosphoserineBy similarity
Modified residuei182 – 1821PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ9UKB3.
MaxQBiQ9UKB3.
PaxDbiQ9UKB3.
PRIDEiQ9UKB3.

PTM databases

iPTMnetiQ9UKB3.
PhosphoSiteiQ9UKB3.

Expressioni

Tissue specificityi

Expressed at high levels in brain, heart, and testis, and at reduced levels in kidney and stomach.

Gene expression databases

BgeeiQ9UKB3.
CleanExiHS_DNAJC12.
ExpressionAtlasiQ9UKB3. baseline and differential.
GenevisibleiQ9UKB3. HS.

Organism-specific databases

HPAiHPA036289.

Interactioni

Protein-protein interaction databases

BioGridi121150. 16 interactions.
IntActiQ9UKB3. 1 interaction.
STRINGi9606.ENSP00000225171.

Structurei

Secondary structure

1
198
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi15 – 184Combined sources
Helixi27 – 3913Combined sources
Turni43 – 453Combined sources
Helixi52 – 6716Combined sources
Helixi69 – 8113Combined sources
Helixi87 – 959Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2CTQNMR-A1-99[»]
ProteinModelPortaliQ9UKB3.
SMRiQ9UKB3. Positions 1-100.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9UKB3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini14 – 7966JPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 J domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0691. Eukaryota.
COG2214. LUCA.
GeneTreeiENSGT00550000074688.
HOGENOMiHOG000017161.
HOVERGENiHBG051379.
InParanoidiQ9UKB3.
KOiK09532.
OrthoDBiEOG7DRJ4W.
PhylomeDBiQ9UKB3.
TreeFamiTF105171.

Family and domain databases

Gene3Di1.10.287.110. 1 hit.
InterProiIPR001623. DnaJ_domain.
[Graphical view]
PfamiPF00226. DnaJ. 1 hit.
[Graphical view]
PRINTSiPR00625. JDOMAIN.
SMARTiSM00271. DnaJ. 1 hit.
[Graphical view]
SUPFAMiSSF46565. SSF46565. 1 hit.
PROSITEiPS50076. DNAJ_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform a (identifier: Q9UKB3-1) [UniParc]FASTAAdd to basket

Also known as: JDP1a

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDAILNYRSE DTEDYYTLLG CDELSSVEQI LAEFKVRALE CHPDKHPENP
60 70 80 90 100
KAVETFQKLQ KAKEILTNEE SRARYDHWRR SQMSMPFQQW EALNDSVKTS
110 120 130 140 150
MHWVVRGKKD LMLEESDKTH TTKMENEECN EQRERKKEEL ASTAEKTEQK
160 170 180 190
EPKPLEKSVS PQNSDSSGFA DVNGWHLRFR WSKDAPSELL RKFRNYEI
Length:198
Mass (Da):23,415
Last modified:May 1, 2000 - v1
Checksum:i03429472C61413EB
GO
Isoform B (identifier: Q9UKB3-2) [UniParc]FASTAAdd to basket

Also known as: JDP1b

The sequence of this isoform differs from the canonical sequence as follows:
     100-107: SMHWVVRG → VGFSLGAT
     108-198: Missing.

Show »
Length:107
Mass (Da):12,456
Checksum:iEA285E75AE30CE11
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti124 – 1241M → I.
Corresponds to variant rs35690028 [ dbSNP | Ensembl ].
VAR_048913
Natural varianti129 – 1291C → W.
Corresponds to variant rs36099123 [ dbSNP | Ensembl ].
VAR_048914

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei100 – 1078SMHWVVRG → VGFSLGAT in isoform B. 1 PublicationVSP_001295
Alternative sequencei108 – 19891Missing in isoform B. 1 PublicationVSP_001296Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF176012 mRNA. Translation: AAD52650.1.
AF176013 mRNA. Translation: AAD52651.1.
AL133551 Genomic DNA. Translation: CAC04172.1.
AL133551 Genomic DNA. Translation: CAI16033.1.
CH471083 Genomic DNA. Translation: EAW54257.1.
BC017018 mRNA. Translation: AAH17018.1.
CCDSiCCDS7271.1. [Q9UKB3-1]
CCDS7272.1. [Q9UKB3-2]
RefSeqiNP_068572.1. NM_021800.2. [Q9UKB3-1]
NP_957714.1. NM_201262.1. [Q9UKB3-2]
UniGeneiHs.260720.

Genome annotation databases

EnsembliENST00000225171; ENSP00000225171; ENSG00000108176. [Q9UKB3-1]
ENST00000339758; ENSP00000343575; ENSG00000108176. [Q9UKB3-2]
GeneIDi56521.
KEGGihsa:56521.
UCSCiuc001jnb.4. human. [Q9UKB3-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF176012 mRNA. Translation: AAD52650.1.
AF176013 mRNA. Translation: AAD52651.1.
AL133551 Genomic DNA. Translation: CAC04172.1.
AL133551 Genomic DNA. Translation: CAI16033.1.
CH471083 Genomic DNA. Translation: EAW54257.1.
BC017018 mRNA. Translation: AAH17018.1.
CCDSiCCDS7271.1. [Q9UKB3-1]
CCDS7272.1. [Q9UKB3-2]
RefSeqiNP_068572.1. NM_021800.2. [Q9UKB3-1]
NP_957714.1. NM_201262.1. [Q9UKB3-2]
UniGeneiHs.260720.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2CTQNMR-A1-99[»]
ProteinModelPortaliQ9UKB3.
SMRiQ9UKB3. Positions 1-100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi121150. 16 interactions.
IntActiQ9UKB3. 1 interaction.
STRINGi9606.ENSP00000225171.

PTM databases

iPTMnetiQ9UKB3.
PhosphoSiteiQ9UKB3.

Polymorphism and mutation databases

BioMutaiDNAJC12.
DMDMi28201819.

Proteomic databases

EPDiQ9UKB3.
MaxQBiQ9UKB3.
PaxDbiQ9UKB3.
PRIDEiQ9UKB3.

Protocols and materials databases

DNASUi56521.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000225171; ENSP00000225171; ENSG00000108176. [Q9UKB3-1]
ENST00000339758; ENSP00000343575; ENSG00000108176. [Q9UKB3-2]
GeneIDi56521.
KEGGihsa:56521.
UCSCiuc001jnb.4. human. [Q9UKB3-1]

Organism-specific databases

CTDi56521.
GeneCardsiDNAJC12.
HGNCiHGNC:28908. DNAJC12.
HPAiHPA036289.
MIMi606060. gene.
neXtProtiNX_Q9UKB3.
PharmGKBiPA134931354.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0691. Eukaryota.
COG2214. LUCA.
GeneTreeiENSGT00550000074688.
HOGENOMiHOG000017161.
HOVERGENiHBG051379.
InParanoidiQ9UKB3.
KOiK09532.
OrthoDBiEOG7DRJ4W.
PhylomeDBiQ9UKB3.
TreeFamiTF105171.

Miscellaneous databases

EvolutionaryTraceiQ9UKB3.
GenomeRNAii56521.
PROiQ9UKB3.
SOURCEiSearch...

Gene expression databases

BgeeiQ9UKB3.
CleanExiHS_DNAJC12.
ExpressionAtlasiQ9UKB3. baseline and differential.
GenevisibleiQ9UKB3. HS.

Family and domain databases

Gene3Di1.10.287.110. 1 hit.
InterProiIPR001623. DnaJ_domain.
[Graphical view]
PfamiPF00226. DnaJ. 1 hit.
[Graphical view]
PRINTSiPR00625. JDOMAIN.
SMARTiSM00271. DnaJ. 1 hit.
[Graphical view]
SUPFAMiSSF46565. SSF46565. 1 hit.
PROSITEiPS50076. DNAJ_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of JDP genes, an evolutionarily conserved J domain-only protein family, from human and moths."
    Lee J., Hahn Y., Yun J.H., Mita K., Chung J.H.
    Biochim. Biophys. Acta 1491:355-363(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A AND B).
  2. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A).
    Tissue: Lung.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. "Solution structure of J-domain from human DnaJ subfamily C member 12."
    RIKEN structural genomics initiative (RSGI)
    Submitted (NOV-2005) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 1-100.

Entry informationi

Entry nameiDJC12_HUMAN
AccessioniPrimary (citable) accession number: Q9UKB3
Secondary accession number(s): Q5JVQ1, Q9UKB2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 2003
Last sequence update: May 1, 2000
Last modified: June 8, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.