Q9UK53 (ING1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 96.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Inhibitor of growth protein 1 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 422 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Cooperates with p53/TP53 in the negative regulatory pathway of cell growth by modulating p53-dependent transcriptional activation. Implicated as a tumor suppressor gene. Ref.12 |
| Subunit structure | Interacts with H3K4me3 and to a lesser extent with H3K4me2. Interacts with TP53. Ref.12 Ref.13 |
| Subcellular location | Nucleus Probable. |
| Tissue specificity | Isoform 2 was expressed in all normal tissues and cells examined, as well as in all breast cancer and melanoma cell lines examined. Isoform 3 was expressed in testis, liver, and kidney, weakly expressed in colon and brain and not expressed in breast and cultured melanocytes. Isoform 4 was highly expressed in testis and weakly expressed in brain, but not expressed in breast, colon, kidney, melanocytes, breast cancer or melanoma cell lines. Ref.3 |
| Domain | The PHD-type zinc finger mediates the binding to H3K4me3. Ref.13 The polybasic region (PBR) is responsive to the binding to phosphoinositides (PtdInsPs), including phosphatidylinositol 5-phosphate (PtdIns5P) By similarity. Ref.13 |
| Involvement in disease | Defects in ING1 are a cause of head and neck squamous cell carcinomas (HNSCC) [MIM:275355]; also known as squamous cell carcinoma of the head and neck. Ref.5 |
| Sequence similarities | Belongs to the ING family. Contains 1 PHD-type zinc finger. |
| Sequence caution | The sequence AAB60879.1 differs from that shown. Reason: Frameshift at position 149. The sequence AAG02579.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell cycle |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing |
| Disease | Disease mutation Tumor suppressor |
| Domain | Zinc-finger |
| Ligand | Metal-binding Zinc |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | cell cycle Inferred from electronic annotation. Source: UniProtKB-KW negative regulation of cell growthNon-traceable author statement Ref.1. Source: UniProtKB negative regulation of cell proliferationTraceable author statement. Source: ProtInc |
| Cellular component | nucleus Non-traceable author statement Ref.5. Source: UniProtKB |
| Molecular function | methylated histone residue binding Inferred from direct assay Ref.13. Source: UniProtKB zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9UK53-1) Also known as: p47ING1a; ING1-ALT2; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UK53-2) Also known as: p33ING1b; Variant A; The sequence of this isoform differs from the canonical sequence as follows: 1-189: MSFVECPYHS...GWGRAWPWKQ → MLSPANGEQL...MREIDAKYQE | ||||||
| Isoform 3 (identifier: Q9UK53-3) Also known as: p24ING1c; ING1-ALT1; Variant B; The sequence of this isoform differs from the canonical sequence as follows: 1-212: Missing. | ||||||
| Isoform 4 (identifier: Q9UK53-4) Also known as: Variant C; The sequence of this isoform differs from the canonical sequence as follows: 1-189: MSFVECPYHS...GWGRAWPWKQ → ME | ||||||
| Isoform 5 (identifier: Q9UK53-5) The sequence of this isoform differs from the canonical sequence as follows: 1-189: MSFVECPYHS...GWGRAWPWKQ → MSFVECPYHSPAERLVAEADEGGPSAITE |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||
Molecule processing | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 422 | 422 | Inhibitor of growth protein 1 | PRO_0000212661 | |||||||||||
Regions | |||||||||||||||
| Zinc finger | 353 – 402 | 50 | PHD-type | ||||||||||||
| Region | 405 – 422 | 18 | PBR By similarity | ||||||||||||
Sites | |||||||||||||||
| Binding site | 355 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 366 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 370 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 378 | 1 | Histone H3K4me3 By similarity | ||||||||||||
Natural variations | |||||||||||||||
| Alternative sequence | 1 – 212 | 212 | Missing in isoform 3. | VSP_009129 | |||||||||||
| Alternative sequence | 1 – 189 | 189 | MSFVE…WPWKQ → MLSPANGEQLHLVNYVEDYL DSIESLPFDLQRNVSLMREI DAKYQE in isoform 2. | VSP_009126 | |||||||||||
| Alternative sequence | 1 – 189 | 189 | MSFVE…WPWKQ → ME in isoform 4. | VSP_009127 | |||||||||||
| Alternative sequence | 1 – 189 | 189 | MSFVE…WPWKQ → MSFVECPYHSPAERLVAEAD EGGPSAITE in isoform 5. | VSP_009128 | |||||||||||
| Natural variant | 125 | 1 | L → R. Ref.1 Ref.5 Ref.6 Corresponds to variant rs7338333 [ dbSNP | Ensembl ]. | VAR_047097 | |||||||||||
| Natural variant | 335 | 1 | A → D in HNSCC. Ref.5 | VAR_017420 | |||||||||||
| Natural variant | 358 | 1 | C → S in HNSCC. Ref.5 | VAR_017421 | |||||||||||
| Natural variant | 359 | 1 | N → S in HNSCC. Ref.5 | VAR_017422 | |||||||||||
Experimental info | |||||||||||||||
| Sequence conflict | 266 | 1 | A → V in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 266 | 1 | A → V in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 266 | 1 | A → V Ref.3 | ||||||||||||
| Sequence conflict | 266 | 1 | A → V Ref.6 | ||||||||||||
| Sequence conflict | 272 | 1 | A → V in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 272 | 1 | A → V in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 272 | 1 | A → V Ref.3 | ||||||||||||
| Sequence conflict | 272 | 1 | A → V Ref.6 | ||||||||||||
| Sequence conflict | 278 | 1 | K → N in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 278 | 1 | K → N in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 278 | 1 | K → N Ref.3 | ||||||||||||
| Sequence conflict | 278 | 1 | K → N Ref.6 | ||||||||||||
| Sequence conflict | 280 | 1 | E → D in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 280 | 1 | E → D in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 280 | 1 | E → D Ref.3 | ||||||||||||
| Sequence conflict | 280 | 1 | E → D Ref.6 | ||||||||||||
| Sequence conflict | 282 | 1 | A → V in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 282 | 1 | A → V in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 282 | 1 | A → V Ref.3 | ||||||||||||
| Sequence conflict | 282 | 1 | A → V Ref.6 | ||||||||||||
| Sequence conflict | 285 | 1 | A → S in AAC00501. Ref.1 | ||||||||||||
| Sequence conflict | 285 | 1 | A → S in AAB60879. Ref.1 | ||||||||||||
| Sequence conflict | 285 | 1 | A → S Ref.3 | ||||||||||||
| Sequence conflict | 285 | 1 | A → S Ref.6 | ||||||||||||
Secondary structure | |||||||||||||||
Helix Strand Turn | |||||||||||||||
| Turn | 356 – 359 | 4 | |||||||||||||
| Turn | 381 – 383 | 3 | |||||||||||||
| Turn | 397 – 399 | 3 | |||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Suppression of the novel growth inhibitor p33ING1 promotes neoplastic transformation." Garkavtsev I.A., Kazarov A.R., Gudkov A.V., Riabowol K. Nat. Genet. 14:415-420(1996) [PubMed: 8944021] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), VARIANT ARG-125. |
| [2] | Erratum Garkavtsev I.A., Kazarov A.R., Gudkov A.V., Riabowol K. Nat. Genet. 23:373-373(1999) |
| [3] | "Cancer-testis antigens and ING1 tumor suppressor gene product are breast cancer antigens: characterization of tissue-specific ING1 transcripts and a homologue gene." Jaeger D., Stockert E., Scanlan M.J., Guere A.O., Jaeger E., Knuth A., Old L.J., Chen Y.-T. Cancer Res. 59:6197-6204(1999) [PubMed: 10626813] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2; 3 AND 4), TISSUE SPECIFICITY. Tissue: Mammary cancer and Testis. |
| [4] | "Genomic organization of the suppressor gene for tumor growth ING1." Baranova A.V., Ivanov D.V., Makeeva N.V., Corcoran M., Nikitin E.A., Borodina T.A., Poltaraus A.B., Glinshchikova O.A., Sudarikov A.B., Oscier D., Iankovskii N.K. Mol. Biol. (Mosk.) 34:263-269(2000) [PubMed: 10779953] [Abstract] Cited for: NUCLEOTIDE SEQUENCE (ISOFORMS 1 AND 2). |
| [5] | "Genomic structure of the human ING1 gene and tumor-specific mutations detected in head and neck squamous cell carcinomas." Gunduz M., Ouchida M., Fukushima K., Hanafusa H., Etani T., Nishioka S., Nishizaki K., Shimizu K. Cancer Res. 60:3143-3146(2000) [PubMed: 10866301] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORMS 1; 2; 3 AND 5), VARIANTS HNSCC ARG-125; ASP-335; SER-358 AND SER-359. |
| [6] | "p24/ING1-ALT1 and p47/ING1-ALT2, distinct alternative transcripts of p33/ING1." Saito A., Furukawa T., Fukushige S., Koyama S., Hoshi M., Hayashi Y., Horii A. J. Hum. Genet. 45:177-181(2000) [PubMed: 10807544] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1; 2 AND 3), VARIANT ARG-125. |
| [7] | "Supplement: sequencing of ING1 tumour suppressor gene cDNAs generated from mRNA recovered from normal and neoplastic cell lines." Nouman G.S., Anderson J.J., Angus B., Lunec J. J. Pathol. 192:266-266(2000) Cited for: NUCLEOTIDE SEQUENCE (ISOFORM 2). Tissue: Brain. |
| [8] | "DNA damage-inducible gene p33ING2 negatively regulates cell proliferation through acetylation of p53." Nagashima M., Shiseki M., Miura K., Hagiwara K., Linke S.P., Pedeux R., Wang X.W., Yokota J., Riabowol K., Harris C.C. Proc. Natl. Acad. Sci. U.S.A. 98:9671-9676(2001) [PubMed: 11481424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 2). |
| [9] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Testis. |
| [10] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed: 15057823] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [11] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [12] | "The candidate tumour suppressor p33ING1 cooperates with p53 in cell growth control." Garkavtsev I.A., Grigorian I.A., Ossovskaya V.S., Chernov M.V., Chumakov P.M., Gudkov A.V. Nature 391:295-298(1998) [PubMed: 9440695] [Abstract] Cited for: FUNCTION, INTERACTION WITH TP53. |
| [13] | "ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression." Shi X., Hong T., Walter K.L., Ewalt M., Michishita E., Hung T., Carney D., Pena P., Lan F., Kaadige M.R., Lacoste N., Cayrou C., Davrazou F., Saha A., Cairns B.R., Ayer D.E., Kutateladze T.G., Shi Y. Gozani O.Nature 442:96-99(2006) [PubMed: 16728974] [Abstract] Cited for: DOMAIN PHD-TYPE ZINC FINGER, INTERACTION WITH HISTONES H3K4ME3 AND H3K4ME2. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF181849 mRNA. Translation: AAF07920.1. AF181850 mRNA. Translation: AAF07921.1. AF001954 mRNA. Translation: AAB60879.1. Frameshift. AF044076 mRNA. Translation: AAC00501.1. AF149721 mRNA. Translation: AAF37421.1. AF149722 mRNA. Translation: AAF37422.1. AF149723 mRNA. Translation: AAF37423.1. AF167551, AF167550 Genomic DNA. Translation: AAG02578.1. AF167551, AF167549 Genomic DNA. Translation: AAG02579.1. Sequence problems. AB037387 Genomic DNA. Translation: BAB08101.1. AB037387 Genomic DNA. Translation: BAB08102.1. AB037387 Genomic DNA. Translation: BAB08103.1. AB037594 mRNA. Translation: BAB20992.2. AB031269 mRNA. Translation: BAA83496.1. AB024401 mRNA. Translation: BAA82886.1. AB024402 mRNA. Translation: BAA82887.1. AB024403 Genomic DNA. Translation: BAA82888.1. AB024404 Genomic DNA. Translation: BAA82889.1. AB024404 Genomic DNA. Translation: BAA83462.1. AB024405 Genomic DNA. Translation: BAA82890.1. AJ310392 mRNA. Translation: CAC38067.1. AF078835 mRNA. Translation: AAG12174.1. AF078837, AF078836 Genomic DNA. Translation: AAG12175.1. AK302353 mRNA. Translation: BAG63679.1. AL157820 Genomic DNA. Translation: CAI16972.1. AL157820 Genomic DNA. Translation: CAI16974.1. AL157820 Genomic DNA. Translation: CAI16975.1. CH471085 Genomic DNA. Translation: EAX09130.1. | ||||||||||||
| IPI | IPI00014324. IPI00099385. IPI00385592. IPI00385608. IPI00397840. | ||||||||||||
| RefSeq | NP_005528.3. NM_005537.3. NP_937860.1. NM_198217.1. NP_937861.1. NM_198218.1. NP_937862.1. NM_198219.1. | ||||||||||||
| UniGene | Hs.46700. Hs.508725. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q9UK53. | ||||||||||||
| SMR | Q9UK53. Positions 352-402. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-24256N. DIP-24257N. DIP-24258N. | ||||||||||||
| IntAct | Q9UK53. 1 interaction. | ||||||||||||
| STRING | Q9UK53. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9UK53. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 212276438. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q9UK53. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000375774; ENSP00000364929; ENSG00000153487. | ||||||||||||
| GeneID | 3621. | ||||||||||||
| KEGG | hsa:3621. | ||||||||||||
| UCSC | uc001vrf.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 3621. | ||||||||||||
| GeneCards | GC13P111365. | ||||||||||||
| HGNC | HGNC:6062. ING1. | ||||||||||||
| HPA | CAB016136. CAB017773. | ||||||||||||
| MIM | 275355. phenotype. 601566. gene. | ||||||||||||
| neXtProt | NX_Q9UK53. | ||||||||||||
| Orphanet | 67037. Squamous cell carcinoma of head and neck. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG13931. | ||||||||||||
| GeneTree | ENSGT00550000074538. | ||||||||||||
| HOVERGEN | HBG006607. | ||||||||||||
| InParanoid | Q9UK53. | ||||||||||||
| OMA | EQIHLVN. | ||||||||||||
| PhylomeDB | Q9UK53. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9UK53. | ||||||||||||
| Bgee | Q9UK53. | ||||||||||||
| Genevestigator | Q9UK53. | ||||||||||||
| GermOnline | ENSG00000153487. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR024610. ING_N. IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit. | ||||||||||||
| Pfam | PF12998. ING. 1 hit. PF00628. PHD. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00249. PHD. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF57903. FYVE_PHD_ZnF. 1 hit. | ||||||||||||
| PROSITE | PS01359. ZF_PHD_1. 1 hit. PS50016. ZF_PHD_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 14163. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | ING1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UK53 Secondary accession number(s): O00532 Q9UK52 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with