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Q9UK10

- ZN225_HUMAN

UniProt

Q9UK10 - ZN225_HUMAN

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Protein

Zinc finger protein 225

Gene
ZNF225
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri176 – 19823C2H2-type 1Add
BLAST
Zinc fingeri204 – 22623C2H2-type 2Add
BLAST
Zinc fingeri232 – 25423C2H2-type 3Add
BLAST
Zinc fingeri260 – 28223C2H2-type 4Add
BLAST
Zinc fingeri288 – 31023C2H2-type 5Add
BLAST
Zinc fingeri316 – 33823C2H2-type 6Add
BLAST
Zinc fingeri344 – 36623C2H2-type 7Add
BLAST
Zinc fingeri372 – 39423C2H2-type 8Add
BLAST
Zinc fingeri400 – 42223C2H2-type 9Add
BLAST
Zinc fingeri428 – 45023C2H2-type 10Add
BLAST
Zinc fingeri456 – 47823C2H2-type 11Add
BLAST
Zinc fingeri484 – 50623C2H2-type 12Add
BLAST
Zinc fingeri512 – 53423C2H2-type 13Add
BLAST
Zinc fingeri540 – 56223C2H2-type 14Add
BLAST
Zinc fingeri568 – 59023C2H2-type 15Add
BLAST
Zinc fingeri596 – 61823C2H2-type 16Add
BLAST
Zinc fingeri624 – 64623C2H2-type 17Add
BLAST
Zinc fingeri652 – 67423C2H2-type 18; degenerateAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_12627. Generic Transcription Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 225
Gene namesi
Name:ZNF225
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 19

Organism-specific databases

HGNCiHGNC:13018. ZNF225.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA37597.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 706706Zinc finger protein 225PRO_0000047466Add
BLAST

Proteomic databases

PRIDEiQ9UK10.

PTM databases

PhosphoSiteiQ9UK10.

Expressioni

Gene expression databases

ArrayExpressiQ9UK10.
BgeeiQ9UK10.
CleanExiHS_ZNF225.
GenevestigatoriQ9UK10.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000262894.

Structurei

3D structure databases

ProteinModelPortaliQ9UK10.
SMRiQ9UK10. Positions 7-49, 145-697.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 7871KRABAdd
BLAST

Sequence similaritiesi

Contains 18 C2H2-type zinc fingers.
Contains 1 KRAB domain.

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

HOGENOMiHOG000234617.
HOVERGENiHBG018163.
InParanoidiQ9UK10.
KOiK09228.
OMAiMREKPFR.
OrthoDBiEOG7KSX7Q.
PhylomeDBiQ9UK10.
TreeFamiTF341885.

Family and domain databases

Gene3Di3.30.160.60. 17 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 17 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 17 hits.
PS50157. ZINC_FINGER_C2H2_2. 18 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9UK10-1 [UniParc]FASTAAdd to Basket

« Hide

MTTLKEAVTF KDVAVVFTEE ELRLLDLAQR KLYREVMLEN FRNLLSVGHQ    50
SLHRDTFHFL KEEKFWMMET ATQREGNLGG KIQMEMETVS ESGTHEGLFS 100
HQTWEQISSD LTRFQDSMVN SFQFSKQDDM PCQVDAGLSI IHVRQKPSEG 150
RTCKKSFSDV SVLDLHQQLQ SREKSHTCDE CGKSFCYSSA LRIHQRVHMG 200
EKLYNCDVCG KEFNQSSHLQ IHQRIHTGEK PFKCEQCGKG FSRRSGLYVH 250
RKLHTGVKPH ICEKCGKAFI HDSQLQEHQR IHTGEKPFKC DICCKSFRSR 300
ANLNRHSMVH MREKPFRCDT CGKSFGLKSA LNSHRMVHTG EKRYKCEECG 350
KRFIYRQDLY KHQIDHTGEK PYNCKECGKS FRWASGLSRH VRVHSGETTF 400
KCEECGKGFY TNSQRYSHQR AHSGEKPYRC EECGKGYKRR LDLDFHQRVH 450
RGEKPYNCKE CGKSFGWASC LLNHQRIHSG EKPFKCEECG KRFTQNSQLY 500
THRRVHSGEK PFKCEECGKR FTQNSQLYSH RRVHTGVKPY KCEECGKGFN 550
SKFNLDMHQR VHTGERPYNC KECGKSFSRA SSILNHKRLH GDEKPFKCEE 600
CGKRFTENSQ LHSHQRVHTG EKPYKCEKCG KSFRWASTHL THQRLHSREK 650
LLQCEDCGKS IVHSSCLKDQ QRDQSGEKTS KCEDCGKRYK RRLNLDTLLS 700
LFLNDT 706
Length:706
Mass (Da):82,471
Last modified:July 25, 2006 - v2
Checksum:i4C357A3AB1E32FB2
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti50 – 501Q → R.
Corresponds to variant rs34863330 [ dbSNP | Ensembl ].
VAR_033560
Natural varianti679 – 6791T → S.
Corresponds to variant rs16978738 [ dbSNP | Ensembl ].
VAR_033561

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti144 – 1474RQKP → KTET in AAF04107. 1 Publication
Sequence conflicti219 – 2191L → Q in AAF04107. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF187991 mRNA. Translation: AAF04107.1.
AK223477 mRNA. Translation: BAD97197.1.
AK292437 mRNA. Translation: BAF85126.1.
AC021092 Genomic DNA. Translation: AAF24967.1.
AC074331 Genomic DNA. Translation: AAF88105.1.
CH471126 Genomic DNA. Translation: EAW57255.1.
BC108912 mRNA. Translation: AAI08913.1.
CCDSiCCDS46100.1.
RefSeqiNP_037494.2. NM_013362.2.
XP_005259279.1. XM_005259222.1.
UniGeneiHs.279567.

Genome annotation databases

EnsembliENST00000262894; ENSP00000262894; ENSG00000256294.
ENST00000590612; ENSP00000468686; ENSG00000256294.
GeneIDi7768.
KEGGihsa:7768.
UCSCiuc002oyj.1. human.

Polymorphism databases

DMDMi110825755.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF187991 mRNA. Translation: AAF04107.1 .
AK223477 mRNA. Translation: BAD97197.1 .
AK292437 mRNA. Translation: BAF85126.1 .
AC021092 Genomic DNA. Translation: AAF24967.1 .
AC074331 Genomic DNA. Translation: AAF88105.1 .
CH471126 Genomic DNA. Translation: EAW57255.1 .
BC108912 mRNA. Translation: AAI08913.1 .
CCDSi CCDS46100.1.
RefSeqi NP_037494.2. NM_013362.2.
XP_005259279.1. XM_005259222.1.
UniGenei Hs.279567.

3D structure databases

ProteinModelPortali Q9UK10.
SMRi Q9UK10. Positions 7-49, 145-697.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000262894.

PTM databases

PhosphoSitei Q9UK10.

Polymorphism databases

DMDMi 110825755.

Proteomic databases

PRIDEi Q9UK10.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000262894 ; ENSP00000262894 ; ENSG00000256294 .
ENST00000590612 ; ENSP00000468686 ; ENSG00000256294 .
GeneIDi 7768.
KEGGi hsa:7768.
UCSCi uc002oyj.1. human.

Organism-specific databases

CTDi 7768.
GeneCardsi GC19P044617.
HGNCi HGNC:13018. ZNF225.
neXtProti NX_Q9UK10.
PharmGKBi PA37597.
GenAtlasi Search...

Phylogenomic databases

HOGENOMi HOG000234617.
HOVERGENi HBG018163.
InParanoidi Q9UK10.
KOi K09228.
OMAi MREKPFR.
OrthoDBi EOG7KSX7Q.
PhylomeDBi Q9UK10.
TreeFami TF341885.

Enzyme and pathway databases

Reactomei REACT_12627. Generic Transcription Pathway.

Miscellaneous databases

GeneWikii ZNF225.
GenomeRNAii 7768.
NextBioi 30071.
PROi Q9UK10.

Gene expression databases

ArrayExpressi Q9UK10.
Bgeei Q9UK10.
CleanExi HS_ZNF225.
Genevestigatori Q9UK10.

Family and domain databases

Gene3Di 3.30.160.60. 17 hits.
InterProi IPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF01352. KRAB. 1 hit.
[Graphical view ]
SMARTi SM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 17 hits.
[Graphical view ]
SUPFAMi SSF109640. SSF109640. 1 hit.
PROSITEi PS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 17 hits.
PS50157. ZINC_FINGER_C2H2_2. 18 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters."
    Shannon M., Hamilton A.T., Gordon L., Branscomb E., Stubbs L.
    Genome Res. 13:1097-1110(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  3. Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Synovial cell.
  4. "The DNA sequence and biology of human chromosome 19."
    Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
    , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
    Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiZN225_HUMAN
AccessioniPrimary (citable) accession number: Q9UK10
Secondary accession number(s): A8K8S2
, Q53F12, Q9NS46, Q9UID8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: July 25, 2006
Last modified: September 3, 2014
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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