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Protein

Metastasis-associated lung adenocarcinoma transcript 1

Gene

MALAT1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Metastasis-associated lung adenocarcinoma transcript 1
Gene namesi
Name:MALAT1
ORF Names:PRO1073, PRO2853
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Unplaced

Organism-specific databases

HGNCiHGNC:29665. MALAT1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5757Metastasis-associated lung adenocarcinoma transcript 1PRO_0000084557Add
BLAST

Expressioni

Gene expression databases

CleanExiHS_MALAT1.
GenevestigatoriQ9UHZ2.

Interactioni

Protein-protein interaction databases

IntActiQ9UHZ2. 16 interactions.
STRINGi9606.ENSP00000402909.

Structurei

3D structure databases

ProteinModelPortaliQ9UHZ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000233459.

Sequencei

Sequence statusi: Complete.

Q9UHZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIMFSSVVR ISGLCLFPNG GMTYNLFCLY LSIHQGAVFS ASRPSYCQAG

YDSEDVI
Length:57
Mass (Da):6,289
Last modified:May 1, 2000 - v1
Checksum:iE3068483E2BB2BEE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF113016 mRNA. Translation: AAF20277.1.
AF119905 mRNA. Translation: AAF69659.1.
AF203815 Genomic DNA. No translation available.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF113016 mRNA. Translation: AAF20277.1.
AF119905 mRNA. Translation: AAF69659.1.
AF203815 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliQ9UHZ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9UHZ2. 16 interactions.
STRINGi9606.ENSP00000402909.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiGC11P065266.
H-InvDBHIX0035841.
HGNCiHGNC:29665. MALAT1.
MIMi607924. gene.
neXtProtiNX_Q9UHZ2.
GenAtlasiSearch...

Phylogenomic databases

HOGENOMiHOG000233459.

Miscellaneous databases

ChiTaRSiMALAT1. human.
PROiQ9UHZ2.
SOURCEiSearch...

Gene expression databases

CleanExiHS_MALAT1.
GenevestigatoriQ9UHZ2.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Functional prediction of the coding sequences of 14 new genes deduced by analysis of cDNA clones from human fetal liver."
    Zhang C., Yu Y., Zhang S., Ouyang S., Luo L., Wei H., Zhou G., Liu M., He F.
    Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Fetal liver.
  2. "Functional prediction of the coding sequences of 79 new genes deduced by analysis of cDNA clones from human fetal liver."
    Zhang C., Yu Y., Zhang S., Wei H., Zhang Y., Zhou G., Bi J., Liu M., He F.
    Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Fetal liver.
  3. "Construction of a 350-kb sequence-ready 11q13 cosmid contig encompassing the markers D11S4933 and D11S546: mapping of 11 genes and 3 tumor-associated translocation breakpoints."
    van Asseldonk M., Schepens M., de Bruijn D., Janssen B., Merkx G., Geurts van Kessel A.
    Genomics 66:35-42(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiMALAT_HUMAN
AccessioniPrimary (citable) accession number: Q9UHZ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: January 7, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.