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Q9UHV5

- RPGFL_HUMAN

UniProt

Q9UHV5 - RPGFL_HUMAN

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Protein
Rap guanine nucleotide exchange factor-like 1
Gene
RAPGEFL1
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Probable guanine nucleotide exchange factor (GEF).

GO - Molecular functioni

  1. guanyl-nucleotide exchange factor activity Source: ProtInc
Complete GO annotation...

GO - Biological processi

  1. G-protein coupled receptor signaling pathway Source: ProtInc
  2. nervous system development Source: ProtInc
  3. regulation of GTPase activity Source: GOC
  4. small GTPase mediated signal transduction Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Guanine-nucleotide releasing factor

Names & Taxonomyi

Protein namesi
Recommended name:
Rap guanine nucleotide exchange factor-like 1
Alternative name(s):
Link guanine nucleotide exchange factor II
Short name:
Link GEFII
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 17

Organism-specific databases

HGNCiHGNC:17428. RAPGEFL1.

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
  2. membrane Source: ProtInc
Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134884826.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 662662Rap guanine nucleotide exchange factor-like 1
PRO_0000349202Add
BLAST

Proteomic databases

MaxQBiQ9UHV5.
PaxDbiQ9UHV5.
PRIDEiQ9UHV5.

PTM databases

PhosphoSiteiQ9UHV5.

Expressioni

Gene expression databases

ArrayExpressiQ9UHV5.
BgeeiQ9UHV5.
CleanExiHS_RAPGEFL1.
GenevestigatoriQ9UHV5.

Organism-specific databases

HPAiHPA022895.

Interactioni

Protein-protein interaction databases

BioGridi119369. 2 interactions.
IntActiQ9UHV5. 1 interaction.
STRINGi9606.ENSP00000408322.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi316 – 3183
Beta strandi330 – 3323
Helixi338 – 34811
Beta strandi349 – 3513
Beta strandi363 – 3686
Helixi383 – 3864
Beta strandi389 – 3968
Turni398 – 4036
Beta strandi410 – 4134

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2DHZNMR-A314-420[»]
ProteinModelPortaliQ9UHV5.
SMRiQ9UHV5. Positions 151-658.

Miscellaneous databases

EvolutionaryTraceiQ9UHV5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini424 – 660237Ras-GEF
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi17 – 118102Gly-rich
Add
BLAST

Sequence similaritiesi

Contains 1 Ras-GEF domain.

Phylogenomic databases

eggNOGiNOG280292.
HOGENOMiHOG000230545.
HOVERGENiHBG056985.
InParanoidiQ9UHV5.
OMAiHQYFVRA.
OrthoDBiEOG7ZD1TF.
PhylomeDBiQ9UHV5.
TreeFamiTF313184.

Family and domain databases

Gene3Di1.10.840.10. 1 hit.
InterProiIPR023578. Ras_GEF_dom.
IPR001895. RasGRF_CDC25.
IPR029071. Ubiquitin-rel_dom.
[Graphical view]
PfamiPF00617. RasGEF. 1 hit.
[Graphical view]
SMARTiSM00147. RasGEF. 1 hit.
[Graphical view]
SUPFAMiSSF48366. SSF48366. 2 hits.
SSF54236. SSF54236. 1 hit.
PROSITEiPS50009. RASGEF_CAT. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9UHV5-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MKPLEKFLKK QTSQLAGRTV AGGPGGGLGS CGGPGGGGGP GGGGGPAGGQ    50
RSLQRRQSVS RLLLPAFLRE PPAEPGLEPP VPEEGGEPAG VAEEPGSGGP 100
CWLQLEEVPG PGPLGGGGPL RSPSSYSSDE LSPGEPLTSP PWAPLGAPER 150
PEHLLNRVLE RLAGGATRDS AASDILLDDI VLTHSLFLPT EKFLQELHQY 200
FVRAGGMEGP EGLGRKQACL AMLLHFLDTY QGLLQEEEGA GHIIKDLYLL 250
IMKDESLYQG LREDTLRLHQ LVETVELKIP EENQPPSKQV KPLFRHFRRI 300
DSCLQTRVAF RGSDEIFCRV YMPDHSYVTI RSRLSASVQD ILGSVTEKLQ 350
YSEEPAGRED SLILVAVSSS GEKVLLQPTE DCVFTALGIN SHLFACTRDS 400
YEALVPLPEE IQVSPGDTEI HRVEPEDVAN HLTAFHWELF RCVHELEFVD 450
YVFHGERGRR ETANLELLLQ RCSEVTHWVA TEVLLCEAPG KRAQLLKKFI 500
KIAALCKQNQ DLLSFYAVVM GLDNAAVSRL RLTWEKLPGK FKNLFRKFEN 550
LTDPCRNHKS YREVISKMKP PVIPFVPLIL KDLTFLHEGS KTLVDGLVNI 600
EKLHSVAEKV RTIRKYRSRP LCLDMEASPN HLQTKAYVRQ FQVIDNQNLL 650
FELSYKLEAN SQ 662
Length:662
Mass (Da):73,265
Last modified:September 2, 2008 - v2
Checksum:iC6724336938D5769
GO
Isoform 2 (identifier: Q9UHV5-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-206: Missing.

Show »
Length:456
Mass (Da):52,343
Checksum:i1BDD93BA234D98CA
GO
Isoform 3 (identifier: Q9UHV5-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-151: Missing.
     152-174: EHLLNRVLERLAGGATRDSAASD → MLIHPRGLPSSSHRRKINSTYFY

Show »
Length:511
Mass (Da):58,783
Checksum:i26B7A9366FB9F5A8
GO

Sequence cautioni

The sequence BAG36274.1 differs from that shown. Reason: Erroneous initiation.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 206206Missing in isoform 2.
VSP_035217Add
BLAST
Alternative sequencei1 – 151151Missing in isoform 3.
VSP_035385Add
BLAST
Alternative sequencei152 – 17423EHLLN…SAASD → MLIHPRGLPSSSHRRKINST YFY in isoform 3.
VSP_035386Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti81 – 822VP → PE in BC029956. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF117946 mRNA. Translation: AAF22003.1.
AK313492 mRNA. Translation: BAG36274.1. Different initiation.
AC068669 Genomic DNA. No translation available.
BC029956 mRNA. No translation available.
BC115374 mRNA. Translation: AAI15375.1.
BC115375 mRNA. Translation: AAI15376.1.
CCDSiCCDS11363.1. [Q9UHV5-2]
RefSeqiNP_057423.1. NM_016339.3. [Q9UHV5-2]
XP_006721996.1. XM_006721933.1. [Q9UHV5-3]
XP_006722000.1. XM_006721937.1. [Q9UHV5-2]
UniGeneiHs.632254.

Genome annotation databases

EnsembliENST00000264644; ENSP00000264644; ENSG00000108352. [Q9UHV5-2]
ENST00000436615; ENSP00000408322; ENSG00000108352. [Q9UHV5-2]
ENST00000456989; ENSP00000394530; ENSG00000108352. [Q9UHV5-3]
GeneIDi51195.
KEGGihsa:51195.
UCSCiuc010cwu.1. human. [Q9UHV5-1]

Polymorphism databases

DMDMi205829945.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF117946 mRNA. Translation: AAF22003.1 .
AK313492 mRNA. Translation: BAG36274.1 . Different initiation.
AC068669 Genomic DNA. No translation available.
BC029956 mRNA. No translation available.
BC115374 mRNA. Translation: AAI15375.1 .
BC115375 mRNA. Translation: AAI15376.1 .
CCDSi CCDS11363.1. [Q9UHV5-2 ]
RefSeqi NP_057423.1. NM_016339.3. [Q9UHV5-2 ]
XP_006721996.1. XM_006721933.1. [Q9UHV5-3 ]
XP_006722000.1. XM_006721937.1. [Q9UHV5-2 ]
UniGenei Hs.632254.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2DHZ NMR - A 314-420 [» ]
ProteinModelPortali Q9UHV5.
SMRi Q9UHV5. Positions 151-658.
ModBasei Search...

Protein-protein interaction databases

BioGridi 119369. 2 interactions.
IntActi Q9UHV5. 1 interaction.
STRINGi 9606.ENSP00000408322.

PTM databases

PhosphoSitei Q9UHV5.

Polymorphism databases

DMDMi 205829945.

Proteomic databases

MaxQBi Q9UHV5.
PaxDbi Q9UHV5.
PRIDEi Q9UHV5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000264644 ; ENSP00000264644 ; ENSG00000108352 . [Q9UHV5-2 ]
ENST00000436615 ; ENSP00000408322 ; ENSG00000108352 . [Q9UHV5-2 ]
ENST00000456989 ; ENSP00000394530 ; ENSG00000108352 . [Q9UHV5-3 ]
GeneIDi 51195.
KEGGi hsa:51195.
UCSCi uc010cwu.1. human. [Q9UHV5-1 ]

Organism-specific databases

CTDi 51195.
GeneCardsi GC17P038333.
HGNCi HGNC:17428. RAPGEFL1.
HPAi HPA022895.
neXtProti NX_Q9UHV5.
PharmGKBi PA134884826.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG280292.
HOGENOMi HOG000230545.
HOVERGENi HBG056985.
InParanoidi Q9UHV5.
OMAi HQYFVRA.
OrthoDBi EOG7ZD1TF.
PhylomeDBi Q9UHV5.
TreeFami TF313184.

Miscellaneous databases

ChiTaRSi RAPGEFL1. human.
EvolutionaryTracei Q9UHV5.
GenomeRNAii 51195.
NextBioi 54206.
PROi Q9UHV5.

Gene expression databases

ArrayExpressi Q9UHV5.
Bgeei Q9UHV5.
CleanExi HS_RAPGEFL1.
Genevestigatori Q9UHV5.

Family and domain databases

Gene3Di 1.10.840.10. 1 hit.
InterProi IPR023578. Ras_GEF_dom.
IPR001895. RasGRF_CDC25.
IPR029071. Ubiquitin-rel_dom.
[Graphical view ]
Pfami PF00617. RasGEF. 1 hit.
[Graphical view ]
SMARTi SM00147. RasGEF. 1 hit.
[Graphical view ]
SUPFAMi SSF48366. SSF48366. 2 hits.
SSF54236. SSF54236. 1 hit.
PROSITEi PS50009. RASGEF_CAT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A new family of Rap guanine nucleotide exchange factors."
    Kawasaki H., Chen E.J., Springett G.M., Graybiel A.M., Housman D.E.
    Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
    Tissue: Tongue.
  3. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
    Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
    , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
    Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-459 (ISOFORM 1).
  5. "Solution structure of the RA domain in the human link guanine nucleotide exchange factor II (Link-GEFII)."
    RIKEN structural genomics initiative (RSGI)
    Submitted (SEP-2006) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 314-420.

Entry informationi

Entry nameiRPGFL_HUMAN
AccessioniPrimary (citable) accession number: Q9UHV5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: July 9, 2014
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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