##gff-version 3 Q9UBZ4 UniProtKB Chain 1 518 . . . ID=PRO_0000200014;Note=DNA-(apurinic or apyrimidinic site) endonuclease 2 Q9UBZ4 UniProtKB Zinc finger 469 518 . . . Note=GRF-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01343 Q9UBZ4 UniProtKB Region 355 407 . . . Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite Q9UBZ4 UniProtKB Region 390 397 . . . Note=Required for the interaction and colocalization with PCNA in nuclear foci in presence of oxidative-induced DNA damaging agents;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:11376153,ECO:0000269|PubMed:32516598;Dbxref=PMID:11376153,PMID:32516598 Q9UBZ4 UniProtKB Active site 156 156 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P27695 Q9UBZ4 UniProtKB Active site 197 197 . . . Note=Proton donor/acceptor;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P27695 Q9UBZ4 UniProtKB Active site 304 304 . . . Note=Proton acceptor;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 8 8 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 48 48 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 197 197 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 199 199 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 303 303 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 304 304 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00764 Q9UBZ4 UniProtKB Binding site 469 469 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01343 Q9UBZ4 UniProtKB Binding site 472 472 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01343 Q9UBZ4 UniProtKB Binding site 495 495 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01343 Q9UBZ4 UniProtKB Binding site 509 509 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01343 Q9UBZ4 UniProtKB Site 199 199 . . . Note=Transition state stabilizer;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P27695 Q9UBZ4 UniProtKB Site 277 277 . . . Note=Important for catalytic activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P27695 Q9UBZ4 UniProtKB Site 304 304 . . . Note=Interaction with DNA substrate;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P27695 Q9UBZ4 UniProtKB Natural variant 141 141 . . . ID=VAR_023390;Note=R->C;Ontology_term=ECO:0000269;evidence=ECO:0000269|Ref.5;Dbxref=dbSNP:rs2301416 Q9UBZ4 UniProtKB Natural variant 141 141 . . . ID=VAR_048261;Note=R->W;Dbxref=dbSNP:rs2301416 Q9UBZ4 UniProtKB Natural variant 269 269 . . . ID=VAR_064033;Note=Identified in a patient with mtDNA maintenance disorders. H->Y;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20843780;Dbxref=dbSNP:rs145122391,PMID:20843780 Q9UBZ4 UniProtKB Natural variant 392 392 . . . ID=VAR_064034;Note=Identified in a patient with mtDNA maintenance disorders. N->H;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:20843780;Dbxref=dbSNP:rs201964062,PMID:20843780 Q9UBZ4 UniProtKB Mutagenesis 48 48 . . . Note=Abolished 3'-5' exonuclease activity%3B when associated with Asn-197. Synthetic lethality in a BRCA1 or BRCA2 mutant cell line background%3B when associated with Asn-197. E->Q;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:32516598;Dbxref=PMID:32516598 Q9UBZ4 UniProtKB Mutagenesis 197 197 . . . Note=Abolished 3'-5' exonuclease activity%3B when associated with Gln-48. Synthetic lethality in a BRCA1 or BRCA2 mutant cell line background%3B when associated with Gln-48. D->N;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:32516598;Dbxref=PMID:32516598 Q9UBZ4 UniProtKB Mutagenesis 269 269 . . . Note=Abolishes AP endodeoxyribonuclease%2C 3'-5' exonuclease activity and 3'-phosphodiesterase activities. H->A Q9UBZ4 UniProtKB Mutagenesis 277 277 . . . Note=Abolishes AP endodeoxyribonuclease%2C 3'-5' exonuclease activity and 3'-phosphodiesterase activities. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16687656;Dbxref=PMID:16687656 Q9UBZ4 UniProtKB Mutagenesis 396 397 . . . Note=Loss of interaction with PCNA. YF->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:32516598;Dbxref=PMID:32516598 Q9UBZ4 UniProtKB Mutagenesis 396 396 . . . Note=Reduces 3'-5' exonuclease activity in presence of PCNA. Does not abolish the 3'-5' exonuclease activity. Does only partially redistributes together with PCNA in nuclear foci in presence of oxidative-induced DNA damaging agents. Y->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19443450;Dbxref=PMID:19443450 Q9UBZ4 UniProtKB Mutagenesis 397 397 . . . Note=Reduces 3'-5' exonuclease activity in presence of PCNA. Does not abolish the 3'-5' exonuclease activity. Does only partially redistributes together with PCNA in nuclear foci in presence of oxidative-induced DNA damaging agents. F->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19443450;Dbxref=PMID:19443450 Q9UBZ4 UniProtKB Sequence conflict 399 399 . . . Note=P->S;Ontology_term=ECO:0000305;evidence=ECO:0000305