Q9UBW7 (ZMYM2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 118.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger MYM-type protein 2 Alternative name(s): Fused in myeloproliferative disorders protein Rearranged in atypical myeloproliferative disorder protein Zinc finger protein 198 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1377 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May function as a transcription factor. |
| Subunit structure | May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. Ref.12 |
| Subcellular location | Nucleus Potential. |
| Involvement in disease | A chromosomal aberration involving ZMYM2 may be a cause of stem cell leukemia lymphoma syndrome (SCLL). Translocation t(8;13)(p11;q12) with FGFR1. SCLL usually presents as lymphoblastic lymphoma in association with a myeloproliferative disorder, often accompanied by pronounced peripheral eosinophilia and/or prominent eosinophilic infiltrates in the affected bone marrow. |
| Sequence similarities | Contains 9 MYM-type zinc fingers. |
| Sequence caution | The sequence AAB88464.1 differs from that shown. Reason: Frameshift at positions 330, 966, 1009 and 1017. The sequence AAC23591.1 differs from that shown. Reason: Frameshift at position 330. The sequence CAA73875.1 differs from that shown. Reason: Frameshift at positions 388, 403, 406, 409 and 418. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Chromosomal rearrangement |
| Domain | Repeat Zinc-finger |
| Ligand | Metal-binding Zinc |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | PML body Inferred from direct assay PubMed 17027752. Source: UniProtKB cytosolTraceable author statement. Source: Reactome |
| Molecular_function | zinc ion binding Non-traceable author statement Ref.1. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9UBW7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UBW7-2) The sequence of this isoform differs from the canonical sequence as follows: 165-251: Missing. 529-549: KYGKLTTCTGCRTQCRFFDMT → VSRNVNGVQGLNIFEHCYYCH 550-1377: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1377 | 1377 | Zinc finger MYM-type protein 2 | PRO_0000191382 | |||||
Regions | |||||||||
| Zinc finger | 352 – 386 | 35 | MYM-type 1 | ||||||
| Zinc finger | 398 – 436 | 39 | MYM-type 2 | ||||||
| Zinc finger | 445 – 480 | 36 | MYM-type 3 | ||||||
| Zinc finger | 491 – 549 | 59 | MYM-type 4 | ||||||
| Zinc finger | 559 – 597 | 39 | MYM-type 5 | ||||||
| Zinc finger | 605 – 652 | 48 | MYM-type 6 | ||||||
| Zinc finger | 660 – 694 | 35 | MYM-type 7 | ||||||
| Zinc finger | 701 – 740 | 40 | MYM-type 8 | ||||||
| Zinc finger | 747 – 781 | 35 | MYM-type 9 | ||||||
Sites | |||||||||
| Site | 913 – 914 | 2 | Breakpoint for translocation to form ZMYM2-FGFR1 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 303 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 305 | 1 | Phosphoserine Ref.14 Ref.17 | ||||||
| Modified residue | 838 | 1 | Phosphoserine Ref.13 Ref.17 | ||||||
| Modified residue | 958 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 1376 | 1 | Phosphothreonine Ref.13 Ref.14 | ||||||
Natural variations | |||||||||
| Alternative sequence | 165 – 251 | 87 | Missing in isoform 2. | VSP_039065 | |||||
| Alternative sequence | 529 – 549 | 21 | KYGKL…FFDMT → VSRNVNGVQGLNIFEHCYYC H in isoform 2. | VSP_039066 | |||||
| Alternative sequence | 550 – 1377 | 828 | Missing in isoform 2. | VSP_039067 | |||||
Experimental info | |||||||||
| Sequence conflict | 102 | 1 | S → P in CAH56193. Ref.4 | ||||||
| Sequence conflict | 110 | 1 | K → E in AAH36372. Ref.7 | ||||||
| Sequence conflict | 304 | 1 | L → V in CAB66556. Ref.4 | ||||||
| Sequence conflict | 330 | 1 | T → S in CAB66556. Ref.4 | ||||||
| Sequence conflict | 411 – 412 | 2 | DK → EQ in CAA73875. Ref.1 | ||||||
| Sequence conflict | 424 | 1 | R → G in CAB66556. Ref.4 | ||||||
| Sequence conflict | 657 – 659 | 3 | NKV → ASL in CAH70133. Ref.5 | ||||||
| Sequence conflict | 657 – 659 | 3 | NKV → ASL in CAH71822. Ref.5 | ||||||
| Sequence conflict | 736 | 1 | K → G in CAA73875. Ref.1 | ||||||
| Sequence conflict | 766 – 767 | 2 | Missing in CAH70133. Ref.5 | ||||||
| Sequence conflict | 766 – 767 | 2 | Missing in CAH71822. Ref.5 | ||||||
| Sequence conflict | 856 | 1 | T → I in AAH36372. Ref.7 | ||||||
| Sequence conflict | 967 | 1 | Missing in AAB88464. Ref.9 | ||||||
| Sequence conflict | 1009 – 1010 | 2 | DF → IS in AAB88464. Ref.9 | ||||||
| Sequence conflict | 1016 | 1 | Missing in AAB88464. Ref.9 | ||||||
| Sequence conflict | 1259 | 1 | C → R in AAH36372. Ref.7 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Fibroblast growth factor receptor 1 is fused to FIM in stem-cell myeloproliferative disorder with t(8;13)(p12;q12)." Popovici C., Adelaide J., Ollendorff V., Chaffanet M., Guasch G., Jacrot M., Leroux D., Birnbaum D., Pebusque M.-J. Proc. Natl. Acad. Sci. U.S.A. 95:5712-5717(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | "Consistent fusion of ZNF198 to the fibroblast growth factor receptor-1 in the t(8;13)(p11;q12) myeloproliferative syndrome." Reiter A., Sohal J., Kulkarni S., Chase A., Macdonald D.H.C., Aguiar R.C.T., Goncalves C., Hernandez J.M., Jennings B.A., Goldman J.M., Cross N.C.P. Blood 92:1735-1742(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "The genomic structure of ZNF198 and location of breakpoints in the t(8;13) myeloproliferative syndrome." Kulkarni S., Reiter A.J., Smedley D., Goldman J.M., Cross N.C.P. Genomics 55:118-121(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [4] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Endometrial tumor. |
| [6] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Testis. |
| [9] | "The t(8;13) atypical myeloproliferative disorder: further analysis of the ZNF198 gene and lack of evidence for multiple genes disrupted on chromosome 13." Still I.H., Cowell J.K. Blood 92:1456-1458(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 152-1377 (ISOFORM 1). |
| [10] | "The t(8;13)(p11;q11-12) rearrangement associated with an atypical myeloproliferative disorder fuses the fibroblast growth factor receptor 1 gene to a novel gene RAMP." Smedley D., Hamoudi R., Clark J., Warren W., Abdul-Rauf M., Somers G., Venter D., Fagan K., Cooper C., Shipley J. Hum. Mol. Genet. 7:637-642(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 170-1020 (ISOFORM 1). |
| [11] | "FGFR1 is fused with a novel zinc-finger gene, ZNF198, in the t(8;13) leukaemia/lymphoma syndrome." Xiao S., Nalabolu S.R., Aster J.C., Ma J., Abruzzo L., Jaffe E.S., Stone R., Weissman S.M., Hudson T.J., Fletcher J.A. Nat. Genet. 18:84-87(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 621-1377 (ISOFORM 1). |
| [12] | "A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes." Hakimi M.-A., Dong Y., Lane W.S., Speicher D.W., Shiekhattar R. J. Biol. Chem. 278:7234-7239(2003) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE BHC COMPLEX WITH HDAC1; HDAC2; HMG20B; KDM1A; RCOR1; PHF21A; ZNF217; ZMYM3; KIAA0182 AND GTF2I. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-838 AND THR-1376, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-305 AND THR-1376, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [17] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-303; SER-305; SER-838 AND SER-958, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | Y13472 mRNA. Translation: CAA73875.1. Frameshift. AJ224901 mRNA. Translation: CAA12204.1. AJ007676 AJ007696 Genomic DNA. Translation: CAA07604.1.AL136621 mRNA. Translation: CAB66556.2. BX647944 mRNA. Translation: CAH56193.1. AL137119, AL138688 Genomic DNA. Translation: CAH70133.1. AL137119 Genomic DNA. Translation: CAH70134.1. AL138688, AL137119 Genomic DNA. Translation: CAH71822.1. CH471075 Genomic DNA. Translation: EAX08244.1. CH471075 Genomic DNA. Translation: EAX08247.1. BC036372 mRNA. Translation: AAH36372.1. AF060181 mRNA. Translation: AAC23591.1. Frameshift. AF035374 mRNA. Translation: AAB88464.1. Frameshift. AF012126 mRNA. Translation: AAC01561.1. |
| IPI | IPI00294603. IPI00646199. |
| PIR | T45119. |
| RefSeq | NP_001177893.1. NM_001190964.1. NP_001177894.1. NM_001190965.1. NP_003444.1. NM_003453.3. NP_932072.1. NM_197968.2. |
| UniGene | Hs.507433. |
3D structure databases | |
| ProteinModelPortal | Q9UBW7. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9UBW7. 9 interactions. |
| MINT | MINT-267007. |
PTM databases | |
| PhosphoSite | Q9UBW7. |
Polymorphism databases | |
| DMDM | 17369677. |
Proteomic databases | |
| PaxDb | Q9UBW7. |
| PRIDE | Q9UBW7. |
Protocols and materials databases | |
| DNASU | 7750. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000382869; ENSP00000372322; ENSG00000121741. ENST00000382871; ENSP00000372324; ENSG00000121741. ENST00000382874; ENSP00000372327; ENSG00000121741. ENST00000382881; ENSP00000372334; ENSG00000121741. ENST00000456228; ENSP00000413744; ENSG00000121741. |
| GeneID | 7750. |
| KEGG | hsa:7750. |
| UCSC | uc001umq.3. human. uc001umr.3. human. |
Organism-specific databases | |
| CTD | 7750. |
| GeneCards | GC13P020532. |
| HGNC | HGNC:12989. ZMYM2. |
| HPA | HPA031765. |
| MIM | 602221. gene. |
| neXtProt | NX_Q9UBW7. |
| PharmGKB | PA37569. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG86062. |
| HOVERGEN | HBG058385. |
| InParanoid | Q9UBW7. |
| OMA | PEVLEWE. |
Enzyme and pathway databases | |
| Reactome | REACT_116125. Disease. |
Gene expression databases | |
| ArrayExpress | Q9UBW7. |
| Bgee | Q9UBW7. |
| Genevestigator | Q9UBW7. |
| GermOnline | ENSG00000121741. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR021893. DUF3504. IPR011017. TRASH_dom. IPR010507. Znf_MYM. [Graphical view] |
| Pfam | PF12012. DUF3504. 1 hit. PF06467. zf-FCS. 9 hits. [Graphical view] |
| SMART | SM00746. TRASH. 9 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | ZMYM2. human. |
| GenomeRNAi | 7750. |
| NextBio | 29992. |
| SOURCE | Search... |
Entry information
| Entry name | ZMYM2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UBW7 Secondary accession number(s): A6NDG0 Q9UEU2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
