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Protein

Origin recognition complex subunit 3

Gene

ORC3

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. The specific DNA sequences that define origins of replication have not been identified yet. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. Binds histone H3 and H4 trimethylation marks H3K9me3, H3K27me3 and H4K20me3.1 Publication

GO - Molecular functioni

  • DNA replication origin binding Source: ProtInc

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processDNA replication

Enzyme and pathway databases

ReactomeiR-HSA-113507 E2F-enabled inhibition of pre-replication complex formation
R-HSA-176187 Activation of ATR in response to replication stress
R-HSA-68616 Assembly of the ORC complex at the origin of replication
R-HSA-68689 CDC6 association with the ORC:origin complex
R-HSA-68827 CDT1 association with the CDC6:ORC:origin complex
R-HSA-68867 Assembly of the pre-replicative complex
R-HSA-68949 Orc1 removal from chromatin
R-HSA-68962 Activation of the pre-replicative complex

Names & Taxonomyi

Protein namesi
Recommended name:
Origin recognition complex subunit 3
Alternative name(s):
Origin recognition complex subunit Latheo
Gene namesi
Name:ORC3
Synonyms:LATHEO, ORC3L
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000135336.14
HGNCiHGNC:8489 ORC3
MIMi604972 gene
neXtProtiNX_Q9UBD5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

DisGeNETi23595
OpenTargetsiENSG00000135336
PharmGKBiPA32810

Polymorphism and mutation databases

BioMutaiORC3
DMDMi8928268

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270831 – 711Origin recognition complex subunit 3Add BLAST711

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei23PhosphoserineCombined sources1
Modified residuei516PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ9UBD5
MaxQBiQ9UBD5
PaxDbiQ9UBD5
PeptideAtlasiQ9UBD5
PRIDEiQ9UBD5
ProteomicsDBi83947
83948 [Q9UBD5-2]

PTM databases

iPTMnetiQ9UBD5
PhosphoSitePlusiQ9UBD5

Expressioni

Gene expression databases

BgeeiENSG00000135336
ExpressionAtlasiQ9UBD5 baseline and differential
GenevisibleiQ9UBD5 HS

Organism-specific databases

HPAiHPA039553
HPA053748

Interactioni

Subunit structurei

Component of ORC, a complex composed of at least 6 subunits: ORC1, ORC2, ORC3, ORC4, ORC5 and ORC6. ORC is regulated in a cell-cycle dependent manner. It is sequentially assembled at the exit from anaphase of mitosis and disassembled as cells enter S phase.1 Publication

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi117130, 44 interactors
ComplexPortaliCPX-1880 Nuclear origin of replication recognition complex
CORUMiQ9UBD5
DIPiDIP-31735N
IntActiQ9UBD5, 41 interactors
MINTiQ9UBD5
STRINGi9606.ENSP00000257789

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5UJ8X-ray6.00A/B/C/D1-711[»]
5UJMelectron microscopy18.00C1-711[»]
ProteinModelPortaliQ9UBD5
SMRiQ9UBD5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ORC3 family.Curated

Phylogenomic databases

eggNOGiKOG2538 Eukaryota
ENOG410XT1W LUCA
GeneTreeiENSGT00390000011376
HOVERGENiHBG007599
InParanoidiQ9UBD5
KOiK02605
OMAiECGRMIN
OrthoDBiEOG091G0AI5
PhylomeDBiQ9UBD5
TreeFamiTF101093

Family and domain databases

InterProiView protein in InterPro
IPR020795 ORC3
PANTHERiPTHR12748 PTHR12748, 1 hit
PfamiView protein in Pfam
PF07034 ORC3_N, 1 hit

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9UBD5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MATSSMSKGC FVFKPNSKKR KISLPIEDYF NKGKNEPEDS KLRFETYQLI
60 70 80 90 100
WQQMKSENER LQEELNKNLF DNLIEFLQKS HSGFQKNSRD LGGQIKLREI
110 120 130 140 150
PTAALVLGVN VTDHDLTFGS LTEALQNNVT PYVVSLQAKD CPDMKHFLQK
160 170 180 190 200
LISQLMDCCV DIKSKEEESV HVTQRKTHYS MDSLSSWYMT VTQKTDPKML
210 220 230 240 250
SKKRTTSSQW QSPPVVVILK DMESFATKVL QDFIIISSQH LHEFPLILIF
260 270 280 290 300
GIATSPIIIH RLLPHAVSSL LCIELFQSLS CKEHLTTVLD KLLLTTQFPF
310 320 330 340 350
KINEKVLQVL TNIFLYHDFS VQNFIKGLQL SLLEHFYSQP LSVLCCNLPE
360 370 380 390 400
AKRRINFLSN NQCENIRRLP SFRRYVEKQA SEKQVALLTN ERYLKEETQL
410 420 430 440 450
LLENLHVYHM NYFLVLRCLH KFTSSLPKYP LGRQIRELYC TCLEKNIWDS
460 470 480 490 500
EEYASVLQLL RMLAKDELMT ILEKCFKVFK SYCENHLGST AKRIEEFLAQ
510 520 530 540 550
FQSLDETKEE EDASGSQPKG LQKTDLYHLQ KSLLEMKELR RSKKQTKFEV
560 570 580 590 600
LRENVVNFID CLVREYLLPP ETQPLHEVVY FSAAHALREH LNAAPRIALH
610 620 630 640 650
TALNNPYYYL KNEALKSEEG CIPNIAPDIC IAYKLHLECS RLINLVDWSE
660 670 680 690 700
AFATVVTAAE KMDANSATSE EMNEIIHARF IRAVSELELL GFIKPTKQKT
710
DHVARLTWGG C
Length:711
Mass (Da):82,254
Last modified:May 1, 2000 - v1
Checksum:iE713569A11B39B1C
GO
Isoform 2 (identifier: Q9UBD5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     505-505: D → DA

Note: No experimental confirmation available.
Show »
Length:712
Mass (Da):82,325
Checksum:i2F7953FCB84DD63F
GO
Isoform 3 (identifier: Q9UBD5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-143: Missing.

Note: No experimental confirmation available.
Show »
Length:568
Mass (Da):65,929
Checksum:i6FEEBF7290C82A97
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti56S → F in BAD96515 (Ref. 5) Curated1
Sequence conflicti86K → R in CAB45715 (PubMed:11230166).Curated1
Sequence conflicti137Q → R in CAB45715 (PubMed:11230166).Curated1
Sequence conflicti471I → M in BAD96515 (Ref. 5) Curated1
Sequence conflicti531K → R in CAB45715 (PubMed:11230166).Curated1
Sequence conflicti539L → F in AAD40220 (PubMed:10402192).Curated1
Sequence conflicti539L → F in AAA96313 (Ref. 10) Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_01451694Q → K1 PublicationCorresponds to variant dbSNP:rs2307365Ensembl.1
Natural variantiVAR_014517126Q → R1 PublicationCorresponds to variant dbSNP:rs2307371Ensembl.1
Natural variantiVAR_014518217V → I1 PublicationCorresponds to variant dbSNP:rs2307389Ensembl.1
Natural variantiVAR_014519247I → V1 PublicationCorresponds to variant dbSNP:rs2307374Ensembl.1
Natural variantiVAR_014520287T → M. Corresponds to variant dbSNP:rs2307381Ensembl.1
Natural variantiVAR_014521389T → P. Corresponds to variant dbSNP:rs2307372Ensembl.1
Natural variantiVAR_014522588R → C. Corresponds to variant dbSNP:rs2307370Ensembl.1
Natural variantiVAR_020656626A → T1 PublicationCorresponds to variant dbSNP:rs28381545Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0448931 – 143Missing in isoform 3. 1 PublicationAdd BLAST143
Alternative sequenceiVSP_017129505D → DA in isoform 2. 2 Publications1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF135044 mRNA Translation: AAD30282.1
AF125507 mRNA Translation: AAD18057.1
AF093535 mRNA Translation: AAD40220.1
AL080116 mRNA Translation: CAB45715.1
AK222795 mRNA Translation: BAD96515.1
AK303195 mRNA Translation: BAG64287.1
AK315911 mRNA Translation: BAH14282.1
AY623113 Genomic DNA Translation: AAT38109.1
AL451126 Genomic DNA No translation available.
AL133211 Genomic DNA No translation available.
BC035494 mRNA Translation: AAH35494.1
BC047689 mRNA Translation: AAH47689.1 Different termination.
U50950 mRNA Translation: AAA96313.1
CCDSiCCDS43486.1 [Q9UBD5-1]
CCDS5012.1 [Q9UBD5-2]
CCDS56440.1 [Q9UBD5-3]
PIRiT12452
RefSeqiNP_001184188.1, NM_001197259.1 [Q9UBD5-3]
NP_036513.2, NM_012381.3 [Q9UBD5-1]
NP_862820.1, NM_181837.2 [Q9UBD5-2]
UniGeneiHs.410228

Genome annotation databases

EnsembliENST00000257789; ENSP00000257789; ENSG00000135336 [Q9UBD5-2]
ENST00000392844; ENSP00000376586; ENSG00000135336 [Q9UBD5-1]
ENST00000546266; ENSP00000444695; ENSG00000135336 [Q9UBD5-3]
GeneIDi23595
KEGGihsa:23595
UCSCiuc003pmg.4 human [Q9UBD5-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Similar proteinsi

Entry informationi

Entry nameiORC3_HUMAN
AccessioniPrimary (citable) accession number: Q9UBD5
Secondary accession number(s): A2A2T5
, B4E025, Q13565, Q53GY6, Q5T159, Q6IUY7, Q86TN5, Q9UG44, Q9UNT6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: June 20, 2018
This is version 154 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

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