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Protein
Submitted name:

COLlagen

Gene

col-93

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-93Imported
ORF Names:CELE_W05B2.5Imported, W05B2.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiW05B2.5; CE20147; WBGene00000668; col-93.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 36HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ9U348.
PaxDbiQ9U348.
PeptideAtlasiQ9U348.

Expressioni

Gene expression databases

BgeeiWBGene00000668.

Interactioni

Protein-protein interaction databases

DIPiDIP-26667N.
IntActiQ9U348. 2 interactors.
MINTiMINT-1077659.
STRINGi6239.W05B2.5.

Structurei

3D structure databases

ProteinModelPortaliQ9U348.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 64Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3544. Eukaryota.
ENOG410XNMM. LUCA.
GeneTreeiENSGT00690000102313.
HOGENOMiHOG000085656.
InParanoidiQ9U348.
OMAiSWEANIG.
OrthoDBiEOG091G153M.

Family and domain databases

InterProiView protein in InterPro
IPR002486. Col_cuticle_N.
IPR008160. Collagen.
PfamiView protein in Pfam
PF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
SMARTiView protein in SMART
SM01088. Col_cuticle_N. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9U348-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEQQRLQAY RFVAYSAVTF SVVAVFSLCI TLPLVYNYVD GIKTQINHEI
60 70 80 90 100
KFCKHSARDI FAEVNHIRGS PKNASRFARQ AGYGTDEAVE TGNTGSQGGS
110 120 130 140 150
CSGCCLPGAA GPAGTPGKPG RPGRPGAAGL PGNPGRPPAQ PCEPITPPPC
160 170 180 190 200
KPCPQGPAGA PGAPGPQGDA GAPGQAGQGS GAGAPGPAGP KGAPGAPGNP
210 220 230 240 250
GQAGAPGQPG SDAQSESSPG APGQAGPQGP PGPAGSPGAP GGPGQAGAPG
260 270 280 290 300
PKGPSGAPGQ PGADGNPGAP GQPGQSGGAG EKGICPKYCA IDGGVFFEDG

TRRK
Length:304
Mass (Da):29,178
Last modified:May 1, 2000 - v1
Checksum:i272AAEB357FB787D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAB63321.1.
RefSeqiNP_499409.1. NM_067008.6.
UniGeneiCel.21322.

Genome annotation databases

EnsemblMetazoaiW05B2.5; W05B2.5; WBGene00000668.
GeneIDi259335.
KEGGicel:CELE_W05B2.5.
UCSCiW05B2.5. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiQ9U348_CAEEL
AccessioniPrimary (citable) accession number: Q9U348
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: September 27, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported