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Protein
Submitted name:

COLlagen

Gene

col-93

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-93Imported
ORF Names:CELE_W05B2.5Imported, W05B2.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiW05B2.5; CE20147; WBGene00000668; col-93.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3625HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ9U348.
PaxDbiQ9U348.

Interactioni

Protein-protein interaction databases

DIPiDIP-26667N.
MINTiMINT-1077659.
STRINGi6239.W05B2.5.

Structurei

3D structure databases

ProteinModelPortaliQ9U348.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini12 – 6453Col_cuticle_NInterPro annotationAdd
BLAST

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3544. Eukaryota.
ENOG410XNMM. LUCA.
GeneTreeiENSGT00690000102313.
HOGENOMiHOG000085656.
InParanoidiQ9U348.
OMAiSWEANIG.
OrthoDBiEOG7N901K.

Family and domain databases

InterProiIPR002486. Col_cuticle_N.
IPR008160. Collagen.
[Graphical view]
PfamiPF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
[Graphical view]
SMARTiSM01088. Col_cuticle_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9U348-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEQQRLQAY RFVAYSAVTF SVVAVFSLCI TLPLVYNYVD GIKTQINHEI
60 70 80 90 100
KFCKHSARDI FAEVNHIRGS PKNASRFARQ AGYGTDEAVE TGNTGSQGGS
110 120 130 140 150
CSGCCLPGAA GPAGTPGKPG RPGRPGAAGL PGNPGRPPAQ PCEPITPPPC
160 170 180 190 200
KPCPQGPAGA PGAPGPQGDA GAPGQAGQGS GAGAPGPAGP KGAPGAPGNP
210 220 230 240 250
GQAGAPGQPG SDAQSESSPG APGQAGPQGP PGPAGSPGAP GGPGQAGAPG
260 270 280 290 300
PKGPSGAPGQ PGADGNPGAP GQPGQSGGAG EKGICPKYCA IDGGVFFEDG

TRRK
Length:304
Mass (Da):29,178
Last modified:May 1, 2000 - v1
Checksum:i272AAEB357FB787D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAB63321.1.
RefSeqiNP_499409.1. NM_067008.6.
UniGeneiCel.21322.

Genome annotation databases

EnsemblMetazoaiW05B2.5; W05B2.5; WBGene00000668.
GeneIDi259335.
KEGGicel:CELE_W05B2.5.
UCSCiW05B2.5. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAB63321.1.
RefSeqiNP_499409.1. NM_067008.6.
UniGeneiCel.21322.

3D structure databases

ProteinModelPortaliQ9U348.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-26667N.
MINTiMINT-1077659.
STRINGi6239.W05B2.5.

Proteomic databases

EPDiQ9U348.
PaxDbiQ9U348.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiW05B2.5; W05B2.5; WBGene00000668.
GeneIDi259335.
KEGGicel:CELE_W05B2.5.
UCSCiW05B2.5. c. elegans.

Organism-specific databases

CTDi259335.
WormBaseiW05B2.5; CE20147; WBGene00000668; col-93.

Phylogenomic databases

eggNOGiKOG3544. Eukaryota.
ENOG410XNMM. LUCA.
GeneTreeiENSGT00690000102313.
HOGENOMiHOG000085656.
InParanoidiQ9U348.
OMAiSWEANIG.
OrthoDBiEOG7N901K.

Miscellaneous databases

NextBioi951650.

Family and domain databases

InterProiIPR002486. Col_cuticle_N.
IPR008160. Collagen.
[Graphical view]
PfamiPF01484. Col_cuticle_N. 1 hit.
PF01391. Collagen. 2 hits.
[Graphical view]
SMARTiSM01088. Col_cuticle_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ9U348_CAEEL
AccessioniPrimary (citable) accession number: Q9U348
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.