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Protein

60S ribosomal protein L31

Gene

rpl-31

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L31
Gene namesi
Name:rpl-31
ORF Names:W09C5.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiW09C5.6a; CE20168; WBGene00004445; rpl-31.
W09C5.6b; CE20169; WBGene00004445; rpl-31.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001537751 – 12260S ribosomal protein L31Add BLAST122

Proteomic databases

EPDiQ9U332.
PaxDbiQ9U332.
PeptideAtlasiQ9U332.
PRIDEiQ9U332.

Expressioni

Gene expression databases

BgeeiWBGene00004445.

Interactioni

Protein-protein interaction databases

BioGridi38629. 1 interactor.
STRINGi6239.W09C5.6a.1.

Structurei

3D structure databases

ProteinModelPortaliQ9U332.
SMRiQ9U332.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0893. Eukaryota.
COG2097. LUCA.
GeneTreeiENSGT00390000005200.
HOGENOMiHOG000216660.
InParanoidiQ9U332.
KOiK02910.
OMAiIKSVPHR.
OrthoDBiEOG091G0YHX.
PhylomeDBiQ9U332.

Family and domain databases

CDDicd00463. Ribosomal_L31e. 1 hit.
Gene3Di3.10.440.10. 1 hit.
InterProiView protein in InterPro
IPR000054. Ribosomal_L31e.
IPR020052. Ribosomal_L31e_CS.
IPR023621. Ribosomal_L31e_dom.
PANTHERiPTHR10956. PTHR10956. 1 hit.
PfamiView protein in Pfam
PF01198. Ribosomal_L31e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD006030. Ribosomal_L31e. 1 hit.
SMARTiView protein in SMART
SM01380. Ribosomal_L31e. 1 hit.
SUPFAMiSSF54575. SSF54575. 1 hit.
PROSITEiView protein in PROSITE
PS01144. RIBOSOMAL_L31E. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform a (identifier: Q9U332-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAPKNEKKSR STINEVVTRE YTIHIHARIR GIGSKKRAPR AIDEIKKFAK
60 70 80 90 100
IQMKTNDVRV DTKLNKFIWS KGIKNVPYRV RVRLSRRRNE DEDSAQKLYT
110 120
LCTYVPCTNF HGLTNVNVDS EE
Note: No experimental confirmation available.
Length:122
Mass (Da):14,261
Last modified:May 1, 2000 - v1
Checksum:i104B26D7EB25CC32
GO
Isoform b (identifier: Q9U332-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-52: Missing.

Note: No experimental confirmation available.
Show »
Length:70
Mass (Da):8,263
Checksum:i2487D9F11CD7A5D3
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0073651 – 52Missing in isoform b. CuratedAdd BLAST52

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z82077 Genomic DNA. Translation: CAB63331.1.
Z82077 Genomic DNA. Translation: CAB63332.1.
RefSeqiNP_493391.1. NM_060990.5. [Q9U332-1]
NP_493392.1. NM_060991.5. [Q9U332-2]
UniGeneiCel.20519.

Genome annotation databases

EnsemblMetazoaiW09C5.6a; W09C5.6a; WBGene00004445. [Q9U332-1]
GeneIDi173235.
KEGGicel:CELE_W09C5.6.
UCSCiW09C5.6a.1. c. elegans. [Q9U332-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL31_CAEEL
AccessioniPrimary (citable) accession number: Q9U332
Secondary accession number(s): Q9U331
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 30, 2003
Last sequence update: May 1, 2000
Last modified: July 5, 2017
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families