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Protein
Submitted name:

ABC transporter, class E

Gene

abce-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC transporter, class EImported
Gene namesi
Name:abce-1Imported
ORF Names:CELE_Y39E4B.1Imported, Y39E4B.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiY39E4B.1; CE21713; WBGene00012714; abce-1.

PTM / Processingi

Proteomic databases

EPDiQ9U2K8.
PaxDbiQ9U2K8.

Interactioni

Protein-protein interaction databases

DIPiDIP-24572N.
MINTiMINT-1044648.
STRINGi6239.Y39E4B.1.1.

Structurei

3D structure databases

ProteinModelPortaliQ9U2K8.
SMRiQ9U2K8. Positions 13-609.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini18 – 43264Fe-4S ferredoxin-typeInterPro annotationAdd
BLAST
Domaini57 – 86304Fe-4S ferredoxin-typeInterPro annotationAdd
BLAST
Domaini81 – 326246ABC transporterInterPro annotationAdd
BLAST
Domaini346 – 572227ABC transporterInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transporter domains.UniRule annotation

Phylogenomic databases

eggNOGiKOG0063. Eukaryota.
COG1245. LUCA.
GeneTreeiENSGT00390000015089.
HOGENOMiHOG000222803.
InParanoidiQ9U2K8.
KOiK06174.
OMAiGIFEKAR.
PhylomeDBiQ9U2K8.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013283. ABCE.
IPR027417. P-loop_NTPase.
IPR007209. RNaseL-inhib_metal-bd_dom.
[Graphical view]
PANTHERiPTHR19248. PTHR19248. 1 hit.
PfamiPF00005. ABC_tran. 2 hits.
PF00037. Fer4. 1 hit.
PF04068. RLI. 1 hit.
[Graphical view]
PRINTSiPR01868. ABCEFAMILY.
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9U2K8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKGPLIKN NETDVPLRIA IVEKDRCKPK NCGLACKRAC PVNRQGKQCI
60 70 80 90 100
VVEATSTISQ ISEILCIGCG ICVKKCPYDA IKIINLPANL ANETTHRYSQ
110 120 130 140 150
NSFKLHRLPT PRCGEVLGLV GTNGIGKSTA LKILAGKQKP NLGNFQKEQE
160 170 180 190 200
WTTIINHFRG SELQNYFTRI LEDTLKCVIK PQYVDQIPRA AKGTVEKNLT
210 220 230 240 250
RKHDNDNLNS VIDQMELRGL LDREIDQLSG GELQRFAIAM CCVQKADVYM
260 270 280 290 300
FDEPSSYLDV KQRLKAAAII RERVSDTNYV VVVEHDLAVL DYLSDFICCL
310 320 330 340 350
YGVPGVYGVV TLPSGVREGI NMFLEGFIRT ENMRFRESKL SFKTSEQQED
360 370 380 390 400
IKRTGNIKYP SMSKTLGNFH LDVEAGDFSD SEIIVMLGEN GTGKTTMIKM
410 420 430 440 450
MAGSLKPEDE NTELPHVSIS YKPQKISPKS ETTVRFMLHD KIQNMYEHPQ
460 470 480 490 500
FKTDVMNPLM MEQLLDRNVK ELSGGELQRV ALALCLGKTA SLYLIDEPSA
510 520 530 540 550
YLDSEQRLHA AKVIKRFIMH AKKTAFVVEH DFIMATYLAD RVVVFEGQPS
560 570 580 590 600
VKCTACKPQS LLEGMNRFLK MLDITFRRDQ ETYRPRINKL DSVKDVDQKK
610
SGQFFFLDDN
Length:610
Mass (Da):68,997
Last modified:May 1, 2000 - v1
Checksum:i4D6072AB393AD8E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAB54424.1.
PIRiT26761.
RefSeqiNP_499717.1. NM_067316.4.
UniGeneiCel.22682.

Genome annotation databases

EnsemblMetazoaiY39E4B.1.1; Y39E4B.1.1; WBGene00012714.
Y39E4B.1.2; Y39E4B.1.2; WBGene00012714.
GeneIDi176733.
KEGGicel:CELE_Y39E4B.1.
UCSCiY39E4B.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAB54424.1.
PIRiT26761.
RefSeqiNP_499717.1. NM_067316.4.
UniGeneiCel.22682.

3D structure databases

ProteinModelPortaliQ9U2K8.
SMRiQ9U2K8. Positions 13-609.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-24572N.
MINTiMINT-1044648.
STRINGi6239.Y39E4B.1.1.

Proteomic databases

EPDiQ9U2K8.
PaxDbiQ9U2K8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY39E4B.1.1; Y39E4B.1.1; WBGene00012714.
Y39E4B.1.2; Y39E4B.1.2; WBGene00012714.
GeneIDi176733.
KEGGicel:CELE_Y39E4B.1.
UCSCiY39E4B.1. c. elegans.

Organism-specific databases

CTDi176733.
WormBaseiY39E4B.1; CE21713; WBGene00012714; abce-1.

Phylogenomic databases

eggNOGiKOG0063. Eukaryota.
COG1245. LUCA.
GeneTreeiENSGT00390000015089.
HOGENOMiHOG000222803.
InParanoidiQ9U2K8.
KOiK06174.
OMAiGIFEKAR.
PhylomeDBiQ9U2K8.

Miscellaneous databases

NextBioi893784.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013283. ABCE.
IPR027417. P-loop_NTPase.
IPR007209. RNaseL-inhib_metal-bd_dom.
[Graphical view]
PANTHERiPTHR19248. PTHR19248. 1 hit.
PfamiPF00005. ABC_tran. 2 hits.
PF00037. Fer4. 1 hit.
PF04068. RLI. 1 hit.
[Graphical view]
PRINTSiPR01868. ABCEFAMILY.
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ9U2K8_CAEEL
AccessioniPrimary (citable) accession number: Q9U2K8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 132 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.