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Protein

60S ribosomal protein L37a

Gene

rpl-43

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 60C4-typeAdd BLAST22

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L37a
Gene namesi
Name:rpl-43
Synonyms:rpl-37a
ORF Names:Y48B6A.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiY48B6A.2; CE22117; WBGene00004456; rpl-43.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001398252 – 9160S ribosomal protein L37aAdd BLAST90

Proteomic databases

EPDiQ9U2A8.
PaxDbiQ9U2A8.
PeptideAtlasiQ9U2A8.
PRIDEiQ9U2A8.

Expressioni

Gene expression databases

BgeeiWBGene00004456.

Interactioni

Protein-protein interaction databases

BioGridi40352. 1 interactor.
DIPiDIP-27124N.
MINTiMINT-1077447.
STRINGi6239.Y48B6A.2.2.

Structurei

3D structure databases

ProteinModelPortaliQ9U2A8.
SMRiQ9U2A8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 60C4-typeAdd BLAST22

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG0402. Eukaryota.
COG1997. LUCA.
GeneTreeiENSGT00390000016988.
HOGENOMiHOG000229493.
InParanoidiQ9U2A8.
KOiK02921.
OMAiISTGIWQ.
OrthoDBiEOG091G107U.
PhylomeDBiQ9U2A8.

Family and domain databases

Gene3Di2.20.25.30. 1 hit.
HAMAPiMF_00327. Ribosomal_L37Ae. 1 hit.
InterProiView protein in InterPro
IPR002674. Ribosomal_L37ae.
IPR011331. Ribosomal_L37ae/L37e.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF01780. Ribosomal_L37ae. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR00280. eL43_euk_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9U2A8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRTKKVGI VGKYGTRYGA SLRKMAKKLE VAQHSRYTCS FCGKEAMKRK
60 70 80 90
ATGIWNCAKC HKVVAGGAYV YGTVTAATVR STIRRLRDLK E
Length:91
Mass (Da):10,102
Last modified:January 23, 2007 - v3
Checksum:i125510DECDE8E4C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL110490 Genomic DNA. Translation: CAB54440.1.
PIRiT26996.
RefSeqiNP_496957.1. NM_064556.5.
UniGeneiCel.35713.

Genome annotation databases

EnsemblMetazoaiY48B6A.2.1; Y48B6A.2.1; WBGene00004456.
Y48B6A.2.2; Y48B6A.2.2; WBGene00004456.
GeneIDi175070.
KEGGicel:CELE_Y48B6A.2.
UCSCiY48B6A.2.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL110490 Genomic DNA. Translation: CAB54440.1.
PIRiT26996.
RefSeqiNP_496957.1. NM_064556.5.
UniGeneiCel.35713.

3D structure databases

ProteinModelPortaliQ9U2A8.
SMRiQ9U2A8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi40352. 1 interactor.
DIPiDIP-27124N.
MINTiMINT-1077447.
STRINGi6239.Y48B6A.2.2.

Proteomic databases

EPDiQ9U2A8.
PaxDbiQ9U2A8.
PeptideAtlasiQ9U2A8.
PRIDEiQ9U2A8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY48B6A.2.1; Y48B6A.2.1; WBGene00004456.
Y48B6A.2.2; Y48B6A.2.2; WBGene00004456.
GeneIDi175070.
KEGGicel:CELE_Y48B6A.2.
UCSCiY48B6A.2.1. c. elegans.

Organism-specific databases

CTDi175070.
WormBaseiY48B6A.2; CE22117; WBGene00004456; rpl-43.

Phylogenomic databases

eggNOGiKOG0402. Eukaryota.
COG1997. LUCA.
GeneTreeiENSGT00390000016988.
HOGENOMiHOG000229493.
InParanoidiQ9U2A8.
KOiK02921.
OMAiISTGIWQ.
OrthoDBiEOG091G107U.
PhylomeDBiQ9U2A8.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q9U2A8.

Gene expression databases

BgeeiWBGene00004456.

Family and domain databases

Gene3Di2.20.25.30. 1 hit.
HAMAPiMF_00327. Ribosomal_L37Ae. 1 hit.
InterProiView protein in InterPro
IPR002674. Ribosomal_L37ae.
IPR011331. Ribosomal_L37ae/L37e.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF01780. Ribosomal_L37ae. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR00280. eL43_euk_arch. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL37A_CAEEL
AccessioniPrimary (citable) accession number: Q9U2A8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 112 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.