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Protein

60S ribosomal protein L37a

Gene

rpl-43

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 60C4-typeAdd BLAST22

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L37a
Gene namesi
Name:rpl-43
Synonyms:rpl-37a
ORF Names:Y48B6A.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiY48B6A.2; CE22117; WBGene00004456; rpl-43.

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001398252 – 9160S ribosomal protein L37aAdd BLAST90

Proteomic databases

EPDiQ9U2A8.
PaxDbiQ9U2A8.
PeptideAtlasiQ9U2A8.
PRIDEiQ9U2A8.

Expressioni

Gene expression databases

BgeeiWBGene00004456.

Interactioni

Protein-protein interaction databases

BioGridi40352. 1 interactor.
DIPiDIP-27124N.
IntActiQ9U2A8. 1 interactor.
MINTiMINT-1077447.
STRINGi6239.Y48B6A.2.2.

Structurei

3D structure databases

ProteinModelPortaliQ9U2A8.
SMRiQ9U2A8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 60C4-typeAdd BLAST22

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG0402. Eukaryota.
COG1997. LUCA.
GeneTreeiENSGT00390000016988.
HOGENOMiHOG000229493.
InParanoidiQ9U2A8.
KOiK02921.
OMAiISTGIWQ.
OrthoDBiEOG091G107U.
PhylomeDBiQ9U2A8.

Family and domain databases

Gene3Di2.20.25.30. 1 hit.
HAMAPiMF_00327. Ribosomal_L37Ae. 1 hit.
InterProiView protein in InterPro
IPR002674. Ribosomal_L37ae.
IPR011331. Ribosomal_L37ae/L37e.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF01780. Ribosomal_L37ae. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR00280. eL43_euk_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9U2A8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRTKKVGI VGKYGTRYGA SLRKMAKKLE VAQHSRYTCS FCGKEAMKRK
60 70 80 90
ATGIWNCAKC HKVVAGGAYV YGTVTAATVR STIRRLRDLK E
Length:91
Mass (Da):10,102
Last modified:January 23, 2007 - v3
Checksum:i125510DECDE8E4C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL110490 Genomic DNA. Translation: CAB54440.1.
PIRiT26996.
RefSeqiNP_496957.1. NM_064556.5.
UniGeneiCel.35713.

Genome annotation databases

EnsemblMetazoaiY48B6A.2.1; Y48B6A.2.1; WBGene00004456.
Y48B6A.2.2; Y48B6A.2.2; WBGene00004456.
GeneIDi175070.
KEGGicel:CELE_Y48B6A.2.
UCSCiY48B6A.2.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiRL37A_CAEEL
AccessioniPrimary (citable) accession number: Q9U2A8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: January 23, 2007
Last modified: September 27, 2017
This is version 113 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families