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Protein

40S ribosomal protein S27

Gene

rps-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+Sequence analysisNote: Binds 1 zinc ion per subunit.Sequence analysis

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27
Gene namesi
Name:rps-27
ORF Names:F56E10.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF56E10.4; CE19904; WBGene00004496; rps-27.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002504092 – 8340S ribosomal protein S27Add BLAST82

Proteomic databases

EPDiQ9TXP0.
PaxDbiQ9TXP0.
PeptideAtlasiQ9TXP0.
PRIDEiQ9TXP0.

Expressioni

Gene expression databases

BgeeiWBGene00004496.

Interactioni

Protein-protein interaction databases

STRINGi6239.F56E10.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ9TXP0.
SMRiQ9TXP0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS27 family.Sequence analysis

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOGENOMiHOG000224977.
InParanoidiQ9TXP0.
KOiK02978.
OMAiCASVLCQ.
OrthoDBiEOG091G157G.
PhylomeDBiQ9TXP0.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiView protein in InterPro
IPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiView protein in Pfam
PF01667. Ribosomal_S27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466. Ribosomal_S27e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9TXP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLAVDLLHP EPQREIRCHK LKRLVQHPNS YFMDVKCSGC FKISTVFSHA
60 70 80
TTVVVCVGCN TVLCQPTRGK AKLTEGCSFR KKQ
Length:83
Mass (Da):9,347
Last modified:January 23, 2007 - v3
Checksum:i871735EE9684C523
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081492 Genomic DNA. Translation: CCD71974.1.
PIRiG88921.
RefSeqiNP_503134.1. NM_070733.5.
UniGeneiCel.17980.

Genome annotation databases

EnsemblMetazoaiF56E10.4.1; F56E10.4.1; WBGene00004496.
F56E10.4.2; F56E10.4.2; WBGene00004496.
GeneIDi178538.
KEGGicel:CELE_F56E10.4.
UCSCiF56E10.4.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081492 Genomic DNA. Translation: CCD71974.1.
PIRiG88921.
RefSeqiNP_503134.1. NM_070733.5.
UniGeneiCel.17980.

3D structure databases

ProteinModelPortaliQ9TXP0.
SMRiQ9TXP0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F56E10.4.1.

Proteomic databases

EPDiQ9TXP0.
PaxDbiQ9TXP0.
PeptideAtlasiQ9TXP0.
PRIDEiQ9TXP0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF56E10.4.1; F56E10.4.1; WBGene00004496.
F56E10.4.2; F56E10.4.2; WBGene00004496.
GeneIDi178538.
KEGGicel:CELE_F56E10.4.
UCSCiF56E10.4.1. c. elegans.

Organism-specific databases

CTDi178538.
WormBaseiF56E10.4; CE19904; WBGene00004496; rps-27.

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOGENOMiHOG000224977.
InParanoidiQ9TXP0.
KOiK02978.
OMAiCASVLCQ.
OrthoDBiEOG091G157G.
PhylomeDBiQ9TXP0.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q9TXP0.

Gene expression databases

BgeeiWBGene00004496.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiView protein in InterPro
IPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiView protein in Pfam
PF01667. Ribosomal_S27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466. Ribosomal_S27e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS27_CAEEL
AccessioniPrimary (citable) accession number: Q9TXP0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 113 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.