Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S27

Gene

rps-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+Sequence analysisNote: Binds 1 zinc ion per subunit.Sequence analysis

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27
Gene namesi
Name:rps-27
ORF Names:F56E10.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF56E10.4; CE19904; WBGene00004496; rps-27.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002504092 – 8340S ribosomal protein S27Add BLAST82

Proteomic databases

EPDiQ9TXP0.
PaxDbiQ9TXP0.
PeptideAtlasiQ9TXP0.
PRIDEiQ9TXP0.

Expressioni

Gene expression databases

BgeeiWBGene00004496.

Interactioni

Protein-protein interaction databases

STRINGi6239.F56E10.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ9TXP0.
SMRiQ9TXP0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS27 family.Sequence analysis

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOGENOMiHOG000224977.
InParanoidiQ9TXP0.
KOiK02978.
OMAiCASVLCQ.
OrthoDBiEOG091G157G.
PhylomeDBiQ9TXP0.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiView protein in InterPro
IPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiView protein in Pfam
PF01667. Ribosomal_S27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466. Ribosomal_S27e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9TXP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLAVDLLHP EPQREIRCHK LKRLVQHPNS YFMDVKCSGC FKISTVFSHA
60 70 80
TTVVVCVGCN TVLCQPTRGK AKLTEGCSFR KKQ
Length:83
Mass (Da):9,347
Last modified:January 23, 2007 - v3
Checksum:i871735EE9684C523
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081492 Genomic DNA. Translation: CCD71974.1.
PIRiG88921.
RefSeqiNP_503134.1. NM_070733.5.
UniGeneiCel.17980.

Genome annotation databases

EnsemblMetazoaiF56E10.4.1; F56E10.4.1; WBGene00004496.
F56E10.4.2; F56E10.4.2; WBGene00004496.
GeneIDi178538.
KEGGicel:CELE_F56E10.4.
UCSCiF56E10.4.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS27_CAEEL
AccessioniPrimary (citable) accession number: Q9TXP0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 113 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families