Unreviewed, UniProtKB/TrEMBL Q9TW26 (Q9TW26_CAEEL)

Names and origin

Protein names

Submitted name:
    Protein T11B7.4b, confirmed by transcript evidence EMBL CAB54312.2

Gene names

Name:	alp-1 WormBase WBGene00001132
ORF Names:	T11B7.4 WormPep T11B7.4b, T11B7.4B, T11B7.4b EMBL CAB54312.2

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	645 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 4 LIM zinc-binding domains. RuleBase RU000350V1

Ontologies

Keywords
Domain	LIM domain RuleBase RU000350V1
Ligand	Metal-binding Zinc
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9TW26-1 [UniParc]. Last modified July 5, 2004. Version 2. Checksum: 9366160E2DC018F3	FASTA	645	70,383
	10 20 30 40 50 60 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL 70 80 90 100 110 120 DINAVDRLLV TAHEKIELIV TRQPSGAATR IWRPEVTENT GPGQDQTPYR VNLQHSSDTR 130 140 150 160 170 180 PPQGFNNSAL PFETDQRVKH MQYNSPLGIY SDKSAAEQYV QQTQGLGDNS GARAAAQRQD 190 200 210 220 230 240 EPAYLRSETL RLLKEQEHGS AGGAGTTLSN HPNPSGLPVC FMCTRPILGV MARAAGKNLH 250 260 270 280 290 300 GDCLSCATCG NSLRNVGHHF IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS SPTAAQPVHI 310 320 330 340 350 360 QDSPRAAYHP QVNTARPVSV SPAPSAGSKT VTTHYHTPKT QGILSPGQRG VPTAAFGADL 370 380 390 400 410 420 SKSVTYGGGV GPGGTHYDSN RLSPAPSQYS TQSRNQSQQH YQQHVVQAPP PVPSNPPPSN 430 440 450 460 470 480 GSSYTKTSFE RTTTETRPQQ NTGAPRAGDF RGTGHLTTTT TTQQNGGRAP FCESCKQQIR 490 500 510 520 530 540 GAFVLATGKS WCPEHFVCAN SSCRRRLLEC GFVEEDGQKF CESCFEQHIA PRCNKCSKPI 550 560 570 580 590 600 ISDCLNALQK KWHPTCFTCA HCQKPFGNSA FYLEQGLPYC EQDWNALFTT KCVSCRYPIE 610 620 630 640 AGDRWVEALG NAFHSNCFTC ARCNHNLEGE SFFAKNGQPF CRLHA

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z54235, Z54237 Genomic DNA. Translation: CAB54190.2. Z54237, Z54235 Genomic DNA. Translation: CAB54312.2.
PIR	T19157.
RefSeq	NP_501534.2.
UniGene	Cel.17109
3D structure databases
HSSP	HSSP built from PDB template 1NYP based on UniProtKB P48059.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9TW26. 1 interaction.
STRING	Q9TW26.
Proteomic databases
PRIDE	Q9TW26.
Genome annotation databases
Ensembl	T11B7.4b; T11B7.4b; T11B7.4; Caenorhabditis elegans. [Genome view]
GeneID	177701.
NMPDR	fig|6239.3.peg.14391.
UCSC	T11B7.4a. c. elegans.
Organism-specific databases
CTD	177701.
WormBase	WBGene00001132. alp-1.
WormPep	T11B7.4b. CE35945. [WorfDB]
Phylogenomic databases
PhylomeDB	Q9TW26.
Gene expression databases
ArrayExpress	Q9TW26.
Family and domain databases
InterPro	IPR001478. PDZ/DHR/GLGF. IPR006643. ZASP. IPR001781. Znf_LIM. [Graphical view]
Gene3D	G3DSA:2.10.110.10. Znf_LIM. 3 hits.
Pfam	PF00412. LIM. 4 hits. [Graphical view]
SMART	SM00132. LIM. 4 hits. SM00228. PDZ. 1 hit. SM00735. ZM. 1 hit. [Graphical view]
PROSITE	PS00478. LIM_DOMAIN_1. 2 hits. PS50023. LIM_DOMAIN_2. 4 hits. PS50106. PDZ. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9TW26_CAEEL

Accession

Primary (citable) accession number: Q9TW26

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	July 5, 2004
Last modified:	December 15, 2009
This is version 68 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)