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Protein
Submitted name:

Protein Slfn4

Gene

Slfn4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • lung alveolus development Source: RGD
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Slfn4Imported
Submitted name:
Schlafen 3, isoform CRA_bImported
Submitted name:
Schlafen-4Imported
Gene namesi
Name:Slfn4Imported
Synonyms:SLFN-4Imported, Slfn3Imported
ORF Names:rCG_34606Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi620455. Slfn4.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei562 – 583HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000048673.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067653.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini206 – 262AlbA_2InterPro annotationAdd BLAST57

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410JAUV. Eukaryota.
ENOG4111BZ2. LUCA.
GeneTreeiENSGT00410000025651.
HOGENOMiHOG000133056.
HOVERGENiHBG057499.
OMAiTVDQDTD.
OrthoDBiEOG091G0916.
TreeFamiTF337168.

Family and domain databases

InterProiIPR029684. Schlafen.
IPR007421. Schlafen_AAA_dom.
[Graphical view]
PANTHERiPTHR12155. PTHR12155. 1 hit.
PfamiPF04326. AlbA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9TPX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT
60 70 80 90 100
LLNSGGGVAK ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK
110 120 130 140 150
DYFLMFVKAW KLKQKGPGIT TLKTNLYIRS ISSSIELKAV NAVKFLKSRK
160 170 180 190 200
CSKGRSDSRL SSPGTIVCNE VLNECLNLFN RDCFTCKEKF CFTKATHAEV
210 220 230 240 250
KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG FEAEKSDLVH
260 270 280 290 300
LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER
310 320 330 340 350
FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS
360 370 380 390 400
RLPHSPRSCC PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ
410 420 430 440 450
LLWAQLDSLP KGTLVVTKRW ALDLPLQDKH GVILDTLHIP QDSLLTLHGF
460 470 480 490 500
VLGGEDLEDD STLLRELGAE LKGYYKQTAV TLKQTLANHG SYTEKIGIAI
510 520 530 540 550
KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL AEILGSRESF
560 570 580
YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP
Length:587
Mass (Da):66,077
Last modified:May 1, 2000 - v1
Checksum:i04008A9217754190
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC128859 Genomic DNA. No translation available.
AF168795 mRNA. Translation: AAD45931.1.
CH473948 Genomic DNA. Translation: EDM05467.1.
RefSeqiNP_446139.1. NM_053687.1.
XP_008766155.1. XM_008767933.2.
UniGeneiRn.80831.

Genome annotation databases

EnsembliENSRNOT00000078046; ENSRNOP00000074064; ENSRNOG00000057092.
ENSRNOT00000079325; ENSRNOP00000072460; ENSRNOG00000057092.
GeneIDi114247.
KEGGirno:114247.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC128859 Genomic DNA. No translation available.
AF168795 mRNA. Translation: AAD45931.1.
CH473948 Genomic DNA. Translation: EDM05467.1.
RefSeqiNP_446139.1. NM_053687.1.
XP_008766155.1. XM_008767933.2.
UniGeneiRn.80831.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067653.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000078046; ENSRNOP00000074064; ENSRNOG00000057092.
ENSRNOT00000079325; ENSRNOP00000072460; ENSRNOG00000057092.
GeneIDi114247.
KEGGirno:114247.

Organism-specific databases

CTDi20558.
RGDi620455. Slfn4.

Phylogenomic databases

eggNOGiENOG410JAUV. Eukaryota.
ENOG4111BZ2. LUCA.
GeneTreeiENSGT00410000025651.
HOGENOMiHOG000133056.
HOVERGENiHBG057499.
OMAiTVDQDTD.
OrthoDBiEOG091G0916.
TreeFamiTF337168.

Gene expression databases

BgeeiENSRNOG00000048673.

Family and domain databases

InterProiIPR029684. Schlafen.
IPR007421. Schlafen_AAA_dom.
[Graphical view]
PANTHERiPTHR12155. PTHR12155. 1 hit.
PfamiPF04326. AlbA_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9TPX1_RAT
AccessioniPrimary (citable) accession number: Q9TPX1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.