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Q9TPX1

- Q9TPX1_RAT

UniProt

Q9TPX1 - Q9TPX1_RAT

Protein
Submitted name:

Protein Slfn3

Gene

Slfn3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Slfn3Imported
    Submitted name:
    Schlafen 3, isoform CRA_bImported
    Submitted name:
    Schlafen-4Imported
    Gene namesi
    Name:Slfn3Imported
    Synonyms:SLFN-4Imported
    ORF Names:rCG_34606Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 10

    Organism-specific databases

    RGDi620455. Slfn3.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9TPX1.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000052808.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG266700.
    GeneTreeiENSGT00410000025651.
    HOGENOMiHOG000133056.
    HOVERGENiHBG057499.
    OMAiTIVCNEV.
    OrthoDBiEOG7GTT3N.
    TreeFamiTF337168.

    Family and domain databases

    InterProiIPR007421. ATPase_AAA-4.
    [Graphical view]
    PfamiPF04326. AAA_4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9TPX1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT    50
    LLNSGGGVAK ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK 100
    DYFLMFVKAW KLKQKGPGIT TLKTNLYIRS ISSSIELKAV NAVKFLKSRK 150
    CSKGRSDSRL SSPGTIVCNE VLNECLNLFN RDCFTCKEKF CFTKATHAEV 200
    KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG FEAEKSDLVH 250
    LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER 300
    FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS 350
    RLPHSPRSCC PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ 400
    LLWAQLDSLP KGTLVVTKRW ALDLPLQDKH GVILDTLHIP QDSLLTLHGF 450
    VLGGEDLEDD STLLRELGAE LKGYYKQTAV TLKQTLANHG SYTEKIGIAI 500
    KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL AEILGSRESF 550
    YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP 587
    Length:587
    Mass (Da):66,077
    Last modified:May 1, 2000 - v1
    Checksum:i04008A9217754190
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06064899 Genomic DNA. No translation available.
    AABR06064900 Genomic DNA. No translation available.
    AF168795 mRNA. Translation: AAD45931.1.
    CH473948 Genomic DNA. Translation: EDM05467.1.
    RefSeqiNP_446139.1. NM_053687.1.
    UniGeneiRn.80831.

    Genome annotation databases

    EnsembliENSRNOT00000072281; ENSRNOP00000067653; ENSRNOG00000048673.
    GeneIDi114247.
    KEGGirno:114247.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06064899 Genomic DNA. No translation available.
    AABR06064900 Genomic DNA. No translation available.
    AF168795 mRNA. Translation: AAD45931.1 .
    CH473948 Genomic DNA. Translation: EDM05467.1 .
    RefSeqi NP_446139.1. NM_053687.1.
    UniGenei Rn.80831.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000052808.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000072281 ; ENSRNOP00000067653 ; ENSRNOG00000048673 .
    GeneIDi 114247.
    KEGGi rno:114247.

    Organism-specific databases

    CTDi 20557.
    RGDi 620455. Slfn3.

    Phylogenomic databases

    eggNOGi NOG266700.
    GeneTreei ENSGT00410000025651.
    HOGENOMi HOG000133056.
    HOVERGENi HBG057499.
    OMAi TIVCNEV.
    OrthoDBi EOG7GTT3N.
    TreeFami TF337168.

    Miscellaneous databases

    NextBioi 618463.

    Gene expression databases

    Genevestigatori Q9TPX1.

    Family and domain databases

    InterProi IPR007421. ATPase_AAA-4.
    [Graphical view ]
    Pfami PF04326. AAA_4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity."
      Shimizu T., Kawakita S., Li Q.-H., Fukuhara S., Fujisawa J.
      FEBS Lett. 539:73-77(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    5. Ensembl
      Submitted (FEB-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiQ9TPX1_RAT
    AccessioniPrimary (citable) accession number: Q9TPX1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3