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Q9TPX1 (Q9TPX1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Schlafen 3, isoform CRA_b EMBL EDM05467.1

Schlafen-4 EMBL AAD45931.1
Gene names
Name:Slfn3 RGD 620455 EMBL EDM05467.1 Ensembl ENSRNOP00000067653
Synonyms:SLFN-4 EMBL AAD45931.1
ORF Names:rCG_34606 EMBL EDM05467.1
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length587 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9TPX1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 04008A9217754190

FASTA58766,077
        10         20         30         40         50         60 
MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT LLNSGGGVAK 

        70         80         90        100        110        120 
ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK DYFLMFVKAW KLKQKGPGIT 

       130        140        150        160        170        180 
TLKTNLYIRS ISSSIELKAV NAVKFLKSRK CSKGRSDSRL SSPGTIVCNE VLNECLNLFN 

       190        200        210        220        230        240 
RDCFTCKEKF CFTKATHAEV KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG 

       250        260        270        280        290        300 
FEAEKSDLVH LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER 

       310        320        330        340        350        360 
FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS RLPHSPRSCC 

       370        380        390        400        410        420 
PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ LLWAQLDSLP KGTLVVTKRW 

       430        440        450        460        470        480 
ALDLPLQDKH GVILDTLHIP QDSLLTLHGF VLGGEDLEDD STLLRELGAE LKGYYKQTAV 

       490        500        510        520        530        540 
TLKQTLANHG SYTEKIGIAI KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL 

       550        560        570        580 
AEILGSRESF YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP 

« Hide

References

« Hide 'large scale' references
[1]"Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity."
Shimizu T., Kawakita S., Li Q.-H., Fukuhara S., Fujisawa J.
FEBS Lett. 539:73-77(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000067653.
[3]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM05467.1.
[4]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM05467.1.
[5]Ensembl
Submitted (FEB-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000067653.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06064899 Genomic DNA. No translation available.
AABR06064900 Genomic DNA. No translation available.
AF168795 mRNA. Translation: AAD45931.1.
CH473948 Genomic DNA. Translation: EDM05467.1.
RefSeqNP_446139.1. NM_053687.1.
UniGeneRn.80831.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000052808.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000072281; ENSRNOP00000067653; ENSRNOG00000048673.
GeneID114247.
KEGGrno:114247.

Organism-specific databases

CTD20557.
RGD620455. Slfn3.

Phylogenomic databases

eggNOGNOG266700.
GeneTreeENSGT00410000025651.
HOGENOMHOG000133056.
HOVERGENHBG057499.
OMATIVCNEV.
OrthoDBEOG7GTT3N.
PhylomeDBQ9TPX1.
TreeFamTF337168.

Gene expression databases

GenevestigatorQ9TPX1.

Family and domain databases

InterProIPR007421. ATPase_AAA-4.
[Graphical view]
PfamPF04326. AAA_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio618463.

Entry information

Entry nameQ9TPX1_RAT
AccessionPrimary (citable) accession number: Q9TPX1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)