Q9TPX1 (Q9TPX1_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Slfn3 Ensembl ENSRNOP00000067653

Submitted name:
Schlafen 3, isoform CRA_b EMBL EDM05467.1
Submitted name:
Schlafen-4 EMBL AAD45931.1

Gene names

Name:	Slfn3 RGD 620455 EMBL EDM05467.1 Ensembl ENSRNOP00000067653
Synonyms:	SLFN-4 EMBL AAD45931.1
ORF Names:	rCG_34606 EMBL EDM05467.1

Organism

Rattus norvegicus (Rat) [Reference proteome]

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	587 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9TPX1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 04008A9217754190	FASTA	587	66,077
	10 20 30 40 50 60 MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT LLNSGGGVAK 70 80 90 100 110 120 ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK DYFLMFVKAW KLKQKGPGIT 130 140 150 160 170 180 TLKTNLYIRS ISSSIELKAV NAVKFLKSRK CSKGRSDSRL SSPGTIVCNE VLNECLNLFN 190 200 210 220 230 240 RDCFTCKEKF CFTKATHAEV KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG 250 260 270 280 290 300 FEAEKSDLVH LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER 310 320 330 340 350 360 FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS RLPHSPRSCC 370 380 390 400 410 420 PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ LLWAQLDSLP KGTLVVTKRW 430 440 450 460 470 480 ALDLPLQDKH GVILDTLHIP QDSLLTLHGF VLGGEDLEDD STLLRELGAE LKGYYKQTAV 490 500 510 520 530 540 TLKQTLANHG SYTEKIGIAI KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL 550 560 570 580 AEILGSRESF YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity." Shimizu T., Kawakita S., Li Q.-H., Fukuhara S., Fujisawa J. FEBS Lett. 539:73-77(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000067653.
[3]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM05467.1.
[4]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM05467.1.
[5]	Ensembl Submitted (FEB-2013) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000067653.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06064899 Genomic DNA. No translation available. AABR06064900 Genomic DNA. No translation available. AF168795 mRNA. Translation: AAD45931.1. CH473948 Genomic DNA. Translation: EDM05467.1.
IPI	IPI00188695.
RefSeq	NP_446139.1. NM_053687.1.
UniGene	Rn.80831.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000052808.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000072281; ENSRNOP00000067653; ENSRNOG00000048673.
GeneID	114247.
KEGG	rno:114247.
Organism-specific databases
CTD	20557.
RGD	620455. Slfn3.
Phylogenomic databases
eggNOG	NOG266700.
GeneTree	ENSGT00410000025651.
HOGENOM	HOG000133056.
HOVERGEN	HBG057499.
OrthoDB	EOG4XSKPH.
Gene expression databases
Genevestigator	Q9TPX1.
Family and domain databases
InterPro	IPR007421. ATPase_AAA-4. [Graphical view]
Pfam	PF04326. AAA_4. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	618463.

Entry information

Entry name

Q9TPX1_RAT

Accession

Primary (citable) accession number: Q9TPX1

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	April 3, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)