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Protein
Submitted name:

Protein Slfn3

Gene

Slfn3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Slfn3Imported
Submitted name:
Schlafen 3, isoform CRA_bImported
Submitted name:
Schlafen-4Imported
Gene namesi
Name:Slfn3Imported
Synonyms:SLFN-4Imported
ORF Names:rCG_34606Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi620455. Slfn3.

Expressioni

Gene expression databases

GenevestigatoriQ9TPX1.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000052808.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG266700.
GeneTreeiENSGT00410000025651.
HOGENOMiHOG000133056.
HOVERGENiHBG057499.
OMAiTIVCNEV.
OrthoDBiEOG7GTT3N.
TreeFamiTF337168.

Family and domain databases

InterProiIPR007421. ATPase_AAA-4.
IPR029684. Schlafen.
[Graphical view]
PANTHERiPTHR12155. PTHR12155. 1 hit.
PfamiPF04326. AAA_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9TPX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT
60 70 80 90 100
LLNSGGGVAK ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK
110 120 130 140 150
DYFLMFVKAW KLKQKGPGIT TLKTNLYIRS ISSSIELKAV NAVKFLKSRK
160 170 180 190 200
CSKGRSDSRL SSPGTIVCNE VLNECLNLFN RDCFTCKEKF CFTKATHAEV
210 220 230 240 250
KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG FEAEKSDLVH
260 270 280 290 300
LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER
310 320 330 340 350
FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS
360 370 380 390 400
RLPHSPRSCC PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ
410 420 430 440 450
LLWAQLDSLP KGTLVVTKRW ALDLPLQDKH GVILDTLHIP QDSLLTLHGF
460 470 480 490 500
VLGGEDLEDD STLLRELGAE LKGYYKQTAV TLKQTLANHG SYTEKIGIAI
510 520 530 540 550
KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL AEILGSRESF
560 570 580
YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP
Length:587
Mass (Da):66,077
Last modified:May 1, 2000 - v1
Checksum:i04008A9217754190
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06064899 Genomic DNA. No translation available.
AABR06064900 Genomic DNA. No translation available.
AF168795 mRNA. Translation: AAD45931.1.
CH473948 Genomic DNA. Translation: EDM05467.1.
RefSeqiNP_446139.1. NM_053687.1.
XP_008766155.1. XM_008767933.1.
UniGeneiRn.80831.

Genome annotation databases

EnsembliENSRNOT00000072281; ENSRNOP00000067653; ENSRNOG00000048673.
ENSRNOT00000076112; ENSRNOP00000068226; ENSRNOG00000048673.
GeneIDi114247.
KEGGirno:114247.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06064899 Genomic DNA. No translation available.
AABR06064900 Genomic DNA. No translation available.
AF168795 mRNA. Translation: AAD45931.1.
CH473948 Genomic DNA. Translation: EDM05467.1.
RefSeqiNP_446139.1. NM_053687.1.
XP_008766155.1. XM_008767933.1.
UniGeneiRn.80831.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000052808.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000072281; ENSRNOP00000067653; ENSRNOG00000048673.
ENSRNOT00000076112; ENSRNOP00000068226; ENSRNOG00000048673.
GeneIDi114247.
KEGGirno:114247.

Organism-specific databases

CTDi20557.
RGDi620455. Slfn3.

Phylogenomic databases

eggNOGiNOG266700.
GeneTreeiENSGT00410000025651.
HOGENOMiHOG000133056.
HOVERGENiHBG057499.
OMAiTIVCNEV.
OrthoDBiEOG7GTT3N.
TreeFamiTF337168.

Miscellaneous databases

NextBioi618463.

Gene expression databases

GenevestigatoriQ9TPX1.

Family and domain databases

InterProiIPR007421. ATPase_AAA-4.
IPR029684. Schlafen.
[Graphical view]
PANTHERiPTHR12155. PTHR12155. 1 hit.
PfamiPF04326. AAA_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity."
    Shimizu T., Kawakita S., Li Q.-H., Fukuhara S., Fujisawa J.
    FEBS Lett. 539:73-77(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  5. Ensembl
    Submitted (FEB-2013) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  6. Ensembl
    Submitted (OCT-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiQ9TPX1_RAT
AccessioniPrimary (citable) accession number: Q9TPX1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: April 29, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.