Q9TNW2 (Q9TNW2_ONCMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
MHC class II beta chain EMBL AAD53026.1

Gene names

Name:	OnmyDBB EMBL AAD53026.1
Synonyms:	oncmyk-DBB EMBL CBX11178.1

Organism

Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) EMBL AAD53026.1

Taxonomic identifier

8022 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonidae › Salmoninae › Oncorhynchus

Protein attributes

Sequence length	246 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS014745

Ontologies

Keywords
Biological process	Immunity
Cellular component	MHC II SAAS SAAS011162 RuleBase RU000321 Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS014745
Gene Ontology (GO)
Biological process	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Inferred from electronic annotation. Source: UniProtKB-KW immune response Inferred from electronic annotation. Source: InterPro
Cellular component	MHC class II protein complex Inferred from electronic annotation. Source: UniProtKB-KW integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9TNW2 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 546DB62331EE60B4	FASTA	246	27,838
	10 20 30 40 50 60 MSKSIRFYIC LAVALSTLYE TDGYASDVVT RCLYSSIDMH GAEFIQSYTF NKVEHLRFNS 70 80 90 100 110 120 TVGEFVGYTE LGLKNAKRLN RGQEVVQMRG ELERLCKPNA DIHYRAILDK TVEPHVRLSS 130 140 150 160 170 180 VTPPSGRHPA MLMCSAYDFY PKPIRVTWLR DGREVKSDVT STEELANGDW YYQIHSHLEY 190 200 210 220 230 240 TPKSGEKISC MVEHISLTEP MMYHWDPSLP EAERNKIAIG ASGLVLGTIL ALAGLIYYKK KSSGVL

References

[1]	"Major histocompatibility genes typing in homozygous clones of rainbow trout with different sensibility to Flavobacterium psychrophilum infection." Franche N., Wu C.L., Gemrot E., Lefranc M.P., Laurens V., Quillet E. Submitted (SEP-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: B3 EMBL CBX11178.1.
[2]	"Expression, polymorphism and linkage of MHC-related genes in rainbow trout." Hansen J.D., Strassburger P., Thorgaard G., Du Pasquier L. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Shasta EMBL AAD53026.1. Tissue: Pronephron EMBL AAD53026.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF115529 mRNA. Translation: AAD53026.1. FR688149 mRNA. Translation: CBX11178.1.
RefSeq	NP_001182463.1. NM_001195534.1.
UniGene	Omy.11661.
3D structure databases
HSSP	HSSP built from PDB template 1HDM based on UniProtKB P28068.
ProteinModelPortal	Q9TNW2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	100500795.
Organism-specific databases
CTD	100500795.
Phylogenomic databases
HOVERGEN	HBG012730.
Family and domain databases
InterPro	IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR003597. Ig_C1-set. IPR011162. MHC_I/II-like_Ag-recog. IPR014745. MHC_II_a/b_N. IPR000353. MHC_II_b_N. [Graphical view]
Gene3D	G3DSA:2.60.40.10. Ig-like_fold. 1 hit. G3DSA:3.10.320.10. MHC_II_alpha_N. 1 hit.
Pfam	PF07654. C1-set. 1 hit. PF00969. MHC_II_beta. 1 hit. [Graphical view]
ProDom	PD000328. MHC_II_b_N. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00407. IGc1. 1 hit. SM00921. MHC_II_beta. 1 hit. [Graphical view]
SUPFAM	SSF54452. MHC_I/II-like_Ag-recog. 1 hit.
PROSITE	PS50835. IG_LIKE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9TNW2_ONCMY

Accession

Primary (citable) accession number: Q9TNW2

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	November 16, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)