Q9TNW0 (Q9TNW0_ONCMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
MHC class II beta chain EMBL AAD53028.1

Gene names

Name:

OnmyDBB EMBL AAD53028.1

Organism

Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) EMBL AAD53028.1

Taxonomic identifier

8022 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonidae › Salmoninae › Oncorhynchus

Protein attributes

Sequence length	213 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS014745

Ontologies

Keywords
Biological process	Immunity
Cellular component	MHC II RuleBase RU000321 SAAS SAAS011162 Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS014745
Gene Ontology (GO)
Biological process	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Inferred from electronic annotation. Source: UniProtKB-KW immune response Inferred from electronic annotation. Source: InterPro
Cellular component	MHC class II protein complex Inferred from electronic annotation. Source: UniProtKB-KW integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	213	1	EMBL AAD53028.1

Sequences

	Sequence		Length	Mass (Da)
	Q9TNW0 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: A58D614584AC9AFF	FASTA	213	24,454
	10 20 30 40 50 60 MSKSIRFYIC LAVALSTLYE TDGYASDVVT RCLYSSIDMH GAEFIQSYTF NKVEHLRFNS 70 80 90 100 110 120 TVGEFVGYTE LGLKNAKRLN RGQEVVQMRG ELERLCEPNA DVHYRAILDK TVEPHVRLSS 130 140 150 160 170 180 VTPPSGRHPA MLMCSAYDFY PKPIRVTWLR DGREVKSDVT STEELANGDW YYQIHSHLEY 190 200 210 TPKSGEKISC MVEHISLTEP MMYHWDPSLP EAE

References

[1]	"Expression, polymorphism and linkage of MHC-related genes in rainbow trout." Hansen J.D., Strassburger P., Thorgaard G., Du Pasquier L. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ARO-F2 EMBL AAD53028.1. Tissue: Spleen EMBL AAD53028.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF115531 mRNA. Translation: AAD53028.1.
3D structure databases
HSSP	HSSP built from PDB template 1HDM based on UniProtKB P28068.
ProteinModelPortal	Q9TNW0.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
HOVERGEN	HBG012730.
Family and domain databases
InterPro	IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR003597. Ig_C1-set. IPR011162. MHC_I/II-like_Ag-recog. IPR014745. MHC_II_a/b_N. IPR000353. MHC_II_b_N. [Graphical view]
Gene3D	G3DSA:2.60.40.10. Ig-like_fold. 1 hit. G3DSA:3.10.320.10. MHC_II_alpha_N. 1 hit.
Pfam	PF07654. C1-set. 1 hit. PF00969. MHC_II_beta. 1 hit. [Graphical view]
ProDom	PD000328. MHC_II_b_N. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00407. IGc1. 1 hit. SM00921. MHC_II_beta. 1 hit. [Graphical view]
SUPFAM	SSF54452. MHC_I/II-like_Ag-recog. 1 hit.
PROSITE	PS50835. IG_LIKE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9TNW0_ONCMY

Accession

Primary (citable) accession number: Q9TNW0

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	January 11, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)