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Protein
Submitted name:

MHC class II RT1D alpha chain antigen

Gene

RT1-Da

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MHC class II RT1D alpha chain antigenImported
Gene namesi
Name:RT1-DaImported
Synonyms:RT1-DaaImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1593283. RT1-Da.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ9TNU6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000048774.

Structurei

3D structure databases

ProteinModelPortaliQ9TNU6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 84MHC_II_alphaInterPro annotationAdd BLAST80

Phylogenomic databases

eggNOGiENOG410IZMF. Eukaryota.
ENOG410YHX9. LUCA.
PhylomeDBiQ9TNU6.

Family and domain databases

Gene3Di3.10.320.10. 1 hit.
InterProiIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamiPF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTiSM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q9TNU6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK
60 70 80
FASFEAQGAL ANIAVDKANL DIMIKRSNNT PDAN
Length:84
Mass (Da):9,641
Last modified:May 1, 2000 - v1
Checksum:iA5FC1CF037AB4DBA
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei84Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ003001 mRNA. Translation: CAA05792.1.
UniGeneiRn.103146.

Genome annotation databases

UCSCiRGD:1593283. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ003001 mRNA. Translation: CAA05792.1.
UniGeneiRn.103146.

3D structure databases

ProteinModelPortaliQ9TNU6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000048774.

Proteomic databases

PaxDbiQ9TNU6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiRGD:1593283. rat.

Organism-specific databases

RGDi1593283. RT1-Da.

Phylogenomic databases

eggNOGiENOG410IZMF. Eukaryota.
ENOG410YHX9. LUCA.
PhylomeDBiQ9TNU6.

Family and domain databases

Gene3Di3.10.320.10. 1 hit.
InterProiIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamiPF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTiSM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9TNU6_RAT
AccessioniPrimary (citable) accession number: Q9TNU6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: December 9, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.