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Q9TNU6 (Q9TNU6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:RT1-Da RGD 1593283
Synonyms:RT1-Daa EMBL CAA05792.1
OrganismRattus norvegicus (Rat) EMBL CAA05792.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length84 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAA05792.1
Non-terminal residue841 EMBL CAA05792.1

Sequences

Sequence LengthMass (Da)Tools
Q9TNU6 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: A5FC1CF037AB4DBA

FASTA849,641
        10         20         30         40         50         60 
IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK FASFEAQGAL 

        70         80 
ANIAVDKANL DIMIKRSNNT PDAN 

« Hide

References

[1]"Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule."
Vestberg M., Brunsberg U., Bergsteinsdottir K., Karlsson M., Gustafsson K., Wedekind D., Hedrich H., Holmdahl R.
Immunogenetics 48:344-349(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LEW.1W EMBL CAA05792.1.
Tissue: Spleen EMBL CAA05792.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ003001 mRNA. Translation: CAA05792.1.
UniGeneRn.103146.

3D structure databases

ProteinModelPortalQ9TNU6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000048774.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1593283. rat.

Organism-specific databases

RGD1593283. RT1-Da.

Phylogenomic databases

InParanoidQ9TNU6.
PhylomeDBQ9TNU6.

Gene expression databases

GenevestigatorQ9TNU6.

Family and domain databases

Gene3D3.10.320.10. 1 hit.
InterProIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamPF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTSM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMSSF54452. SSF54452. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9TNU6_RAT
AccessionPrimary (citable) accession number: Q9TNU6
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)