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Q9TNU6

- Q9TNU6_RAT

UniProt

Q9TNU6 - Q9TNU6_RAT

Protein
Submitted name:

MHC class II RT1D alpha chain antigen

Gene

RT1-Da

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Biological processi

    1. antigen processing and presentation Source: InterPro
    2. immune response Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    MHC class II RT1D alpha chain antigenImported
    Gene namesi
    Name:RT1-DaImported
    Synonyms:RT1-DaaImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1593283. RT1-Da.

    Subcellular locationi

    GO - Cellular componenti

    1. MHC class II protein complex Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ9TNU6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000048774.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9TNU6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    InParanoidiQ9TNU6.
    PhylomeDBiQ9TNU6.

    Family and domain databases

    Gene3Di3.10.320.10. 1 hit.
    InterProiIPR011162. MHC_I/II-like_Ag-recog.
    IPR014745. MHC_II_a/b_N.
    IPR001003. MHC_II_a_N.
    [Graphical view]
    PfamiPF00993. MHC_II_alpha. 1 hit.
    [Graphical view]
    SMARTiSM00920. MHC_II_alpha. 1 hit.
    [Graphical view]
    SUPFAMiSSF54452. SSF54452. 1 hit.

    Sequencei

    Sequence statusi: Fragment.

    Q9TNU6-1 [UniParc]FASTAAdd to Basket

    « Hide

    IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK   50
    FASFEAQGAL ANIAVDKANL DIMIKRSNNT PDAN 84
    Length:84
    Mass (Da):9,641
    Last modified:May 1, 2000 - v1
    Checksum:iA5FC1CF037AB4DBA
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported
    Non-terminal residuei84 – 841Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ003001 mRNA. Translation: CAA05792.1.
    UniGeneiRn.103146.

    Genome annotation databases

    UCSCiRGD:1593283. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ003001 mRNA. Translation: CAA05792.1 .
    UniGenei Rn.103146.

    3D structure databases

    ProteinModelPortali Q9TNU6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000048774.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:1593283. rat.

    Organism-specific databases

    RGDi 1593283. RT1-Da.

    Phylogenomic databases

    InParanoidi Q9TNU6.
    PhylomeDBi Q9TNU6.

    Gene expression databases

    Genevestigatori Q9TNU6.

    Family and domain databases

    Gene3Di 3.10.320.10. 1 hit.
    InterProi IPR011162. MHC_I/II-like_Ag-recog.
    IPR014745. MHC_II_a/b_N.
    IPR001003. MHC_II_a_N.
    [Graphical view ]
    Pfami PF00993. MHC_II_alpha. 1 hit.
    [Graphical view ]
    SMARTi SM00920. MHC_II_alpha. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54452. SSF54452. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule."
      Vestberg M., Brunsberg U., Bergsteinsdottir K., Karlsson M., Gustafsson K., Wedekind D., Hedrich H., Holmdahl R.
      Immunogenetics 48:344-349(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: LEW.1WImported.
      Tissue: SpleenImported.

    Entry informationi

    Entry nameiQ9TNU6_RAT
    AccessioniPrimary (citable) accession number: Q9TNU6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)