Q9TNU6 (Q9TNU6_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
MHC class II RT1D alpha chain antigen EMBL CAA05792.1

Gene names

Name:	RT1-Da RGD 1593283
Synonyms:	RT1-Daa EMBL CAA05792.1

Organism

Rattus norvegicus (Rat) EMBL CAA05792.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	84 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	antigen processing and presentation Inferred from electronic annotation. Source: InterPro immune response Inferred from electronic annotation. Source: InterPro
Cellular_component	MHC class II protein complex Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL CAA05792.1
	Non-terminal residue	84	1	EMBL CAA05792.1

Sequences

	Sequence		Length	Mass (Da)
	Q9TNU6 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: A5FC1CF037AB4DBA	FASTA	84	9,641
	10 20 30 40 50 60 IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK FASFEAQGAL 70 80 ANIAVDKANL DIMIKRSNNT PDAN

References

[1]	"Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule." Vestberg M., Brunsberg U., Bergsteinsdottir K., Karlsson M., Gustafsson K., Wedekind D., Hedrich H., Holmdahl R. Immunogenetics 48:344-349(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: LEW.1W EMBL CAA05792.1. Tissue: Spleen EMBL CAA05792.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AJ003001 mRNA. Translation: CAA05792.1.
IPI	IPI00422049.
UniGene	Rn.103146.
3D structure databases
HSSP	HSSP built from PDB template 1KTD based on UniProtKB P01904.
ProteinModelPortal	Q9TNU6.
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000048774.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
UCSC	RGD:1593283. rat.
Organism-specific databases
RGD	1593283. RT1-Da.
Phylogenomic databases
InParanoid	Q9TNU6.
Gene expression databases
Genevestigator	Q9TNU6.
Family and domain databases
Gene3D	3.10.320.10. 1 hit.
InterPro	IPR011162. MHC_I/II-like_Ag-recog. IPR014745. MHC_II_a/b_N. IPR001003. MHC_II_a_N. [Graphical view]
Pfam	PF00993. MHC_II_alpha. 1 hit. [Graphical view]
SMART	SM00920. MHC_II_alpha. 1 hit. [Graphical view]
SUPFAM	SSF54452. MHC_I/II-like_Ag-recog. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9TNU6_RAT

Accession

Primary (citable) accession number: Q9TNU6

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	April 3, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)