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Q9TNU6

- Q9TNU6_RAT

UniProt

Q9TNU6 - Q9TNU6_RAT

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Protein
Submitted name:

MHC class II RT1D alpha chain antigen

Gene

RT1-Da

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. antigen processing and presentation Source: InterPro
  2. immune response Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MHC class II RT1D alpha chain antigenImported
Gene namesi
Name:RT1-DaImported
Synonyms:RT1-DaaImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1593283. RT1-Da.

Subcellular locationi

GO - Cellular componenti

  1. MHC class II protein complex Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9TNU6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000048774.

Structurei

3D structure databases

ProteinModelPortaliQ9TNU6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

PhylomeDBiQ9TNU6.

Family and domain databases

Gene3Di3.10.320.10. 1 hit.
InterProiIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamiPF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTiSM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q9TNU6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK
60 70 80
FASFEAQGAL ANIAVDKANL DIMIKRSNNT PDAN
Length:84
Mass (Da):9,641
Last modified:May 1, 2000 - v1
Checksum:iA5FC1CF037AB4DBA
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei84 – 841Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ003001 mRNA. Translation: CAA05792.1.
UniGeneiRn.103146.

Genome annotation databases

UCSCiRGD:1593283. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ003001 mRNA. Translation: CAA05792.1 .
UniGenei Rn.103146.

3D structure databases

ProteinModelPortali Q9TNU6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000048774.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:1593283. rat.

Organism-specific databases

RGDi 1593283. RT1-Da.

Phylogenomic databases

PhylomeDBi Q9TNU6.

Gene expression databases

Genevestigatori Q9TNU6.

Family and domain databases

Gene3Di 3.10.320.10. 1 hit.
InterProi IPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view ]
Pfami PF00993. MHC_II_alpha. 1 hit.
[Graphical view ]
SMARTi SM00920. MHC_II_alpha. 1 hit.
[Graphical view ]
SUPFAMi SSF54452. SSF54452. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule."
    Vestberg M., Brunsberg U., Bergsteinsdottir K., Karlsson M., Gustafsson K., Wedekind D., Hedrich H., Holmdahl R.
    Immunogenetics 48:344-349(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: LEW.1WImported.
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ9TNU6_RAT
AccessioniPrimary (citable) accession number: Q9TNU6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: October 29, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)