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Protein
Submitted name:

MHC class II RT1D alpha chain antigen

Gene

RT1-Daa

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
MHC class II RT1D alpha chain antigenImported
Gene namesi
Name:RT1-DaaImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Structurei

3D structure databases

ProteinModelPortaliQ9TNU6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 84MHC_II_alphaInterPro annotationAdd BLAST80

Phylogenomic databases

eggNOGiENOG410IZMF Eukaryota
ENOG410YHX9 LUCA
PhylomeDBiQ9TNU6

Family and domain databases

Gene3Di3.10.320.10, 1 hit
InterProiView protein in InterPro
IPR011162 MHC_I/II-like_Ag-recog
IPR014745 MHC_II_a/b_N
IPR001003 MHC_II_a_N
PfamiView protein in Pfam
PF00993 MHC_II_alpha, 1 hit
SMARTiView protein in SMART
SM00920 MHC_II_alpha, 1 hit
SUPFAMiSSF54452 SSF54452, 1 hit

Sequencei

Sequence statusi: Fragment.

Q9TNU6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
IKEEHTIIQA EFYLSPDQNG EFMFDFDGDE IFHVDIKKSE TIWRLEEFAK
60 70 80
FASFEAQGAL ANIAVDKANL DIMIKRSNNT PDAN
Length:84
Mass (Da):9,641
Last modified:May 1, 2000 - v1
Checksum:iA5FC1CF037AB4DBA
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei84Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ003001 mRNA Translation: CAA05792.1
UniGeneiRn.103146

Genome annotation databases

UCSCiRGD:1593283 rat

Similar proteinsi

Entry informationi

Entry nameiQ9TNU6_RAT
AccessioniPrimary (citable) accession number: Q9TNU6
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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