Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Photosystem II reaction center protein Ycf12

Gene

ycf12

Organism
Cyanidium caldarium (Red alga)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

A core subunit of photosystem II (PSII).UniRule annotation

GO - Biological processi

Keywordsi

Biological processPhotosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Photosystem II reaction center protein Ycf12UniRule annotation
Gene namesi
Name:ycf12UniRule annotation
Synonyms:ycf34
Encoded oniPlastid; Chloroplast
OrganismiCyanidium caldarium (Red alga)
Taxonomic identifieri2771 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeCyanidialesCyanidiaceaeCyanidium

Subcellular locationi

  • Plastidchloroplast thylakoid membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 26HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Chloroplast, Membrane, Photosystem II, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000590181 – 35Photosystem II reaction center protein Ycf12Add BLAST35

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4YUUX-ray2.77Y1/Y2/y1/y21-35[»]
SMRiQ9TLX0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Ycf12 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

HAMAPiMF_01329. PSII_Ycf12. 1 hit.
InterProiView protein in InterPro
IPR010284. PSII_Ycf12_core-subunit.
PfamiView protein in Pfam
PF05969. PSII_Ycf12. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9TLX0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MLNWQVIVQL VFLALIITTG PVIIVYLSTR ERNLL
Length:35
Mass (Da):4,041
Last modified:May 1, 2000 - v1
Checksum:i44D366850F870AEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF022186 Genomic DNA. Translation: AAF12946.1.
RefSeqiNP_045148.1. NC_001840.1.

Genome annotation databases

GeneIDi800244.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiYCF12_CYACA
AccessioniPrimary (citable) accession number: Q9TLX0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 20, 2001
Last sequence update: May 1, 2000
Last modified: May 10, 2017
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families