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Protein

Pentatricopeptide repeat-containing protein ELI1, chloroplastic

Gene

ELI1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the site 5 of ndhB1 and ndhB2 (ndhB1-5 and ndhB2-5 sites corresponding to cytidine-830), which are plastid-encoded subunits of the NADH-plastoquinone oxidoreductase. May provide the catalytic activity for editing site conversion.1 Publication

Cofactori

Zn2+1 PublicationNote: Binds 2 zinc ions per subunit.1 Publication

GO - Molecular functioni

  • endonuclease activity Source: GO_Central
  • RNA binding Source: GO_Central
  • zinc ion binding Source: UniProtKB

GO - Biological processi

  • chloroplast RNA modification Source: UniProtKB
  • mRNA processing Source: UniProtKB-KW
  • RNA modification Source: GO_Central

Keywordsi

Molecular functionRNA-binding
Biological processmRNA processing
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyciARA:AT4G37830-MONOMER
MetaCyc:AT4G37830-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein ELI1, chloroplasticCurated
Alternative name(s):
Protein EDITING LACKING INSERTIONAL MUTANT 11 Publication
Gene namesi
Name:ELI11 Publication
Synonyms:PCMP-H48
Ordered Locus Names:At4g37380
ORF Names:F6G17.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G37380
TAIRilocus:2126352 AT4G37380

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 19ChloroplastSequence analysisAdd BLAST19
ChainiPRO_000036347120 – 632Pentatricopeptide repeat-containing protein ELI1, chloroplasticAdd BLAST613

Proteomic databases

PaxDbiQ9SZT8
PRIDEiQ9SZT8

Expressioni

Gene expression databases

ExpressionAtlasiQ9SZT8 baseline and differential
GenevisibleiQ9SZT8 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G37380.1

Structurei

3D structure databases

ProteinModelPortaliQ9SZT8
SMRiQ9SZT8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati94 – 128PPR 1Add BLAST35
Repeati129 – 159PPR 2Add BLAST31
Repeati160 – 194PPR 3Add BLAST35
Repeati196 – 221PPR 4Add BLAST26
Repeati222 – 256PPR 5Add BLAST35
Repeati258 – 292PPR 6Add BLAST35
Repeati293 – 323PPR 7Add BLAST31
Repeati324 – 354PPR 8Add BLAST31
Repeati360 – 395PPR 9Add BLAST36
Repeati396 – 426PPR 10Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni431 – 506Type E motifAdd BLAST76
Regioni497 – 512Required for function in RNA editing1 PublicationAdd BLAST16
Regioni507 – 537Type E(+) motifAdd BLAST31
Regioni538 – 632Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9SZT8
OMAiMEEEYAI
OrthoDBiEOG093605E3
PhylomeDBiQ9SZT8

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 5 hits
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SZT8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSPLLATS LPQNQLSTTA TARFRLPPPE KLAVLIDKSQ SVDEVLQIHA
60 70 80 90 100
AILRHNLLLH PRYPVLNLKL HRAYASHGKI RHSLALFHQT IDPDLFLFTA
110 120 130 140 150
AINTASINGL KDQAFLLYVQ LLSSEINPNE FTFSSLLKSC STKSGKLIHT
160 170 180 190 200
HVLKFGLGID PYVATGLVDV YAKGGDVVSA QKVFDRMPER SLVSSTAMIT
210 220 230 240 250
CYAKQGNVEA ARALFDSMCE RDIVSWNVMI DGYAQHGFPN DALMLFQKLL
260 270 280 290 300
AEGKPKPDEI TVVAALSACS QIGALETGRW IHVFVKSSRI RLNVKVCTGL
310 320 330 340 350
IDMYSKCGSL EEAVLVFNDT PRKDIVAWNA MIAGYAMHGY SQDALRLFNE
360 370 380 390 400
MQGITGLQPT DITFIGTLQA CAHAGLVNEG IRIFESMGQE YGIKPKIEHY
410 420 430 440 450
GCLVSLLGRA GQLKRAYETI KNMNMDADSV LWSSVLGSCK LHGDFVLGKE
460 470 480 490 500
IAEYLIGLNI KNSGIYVLLS NIYASVGDYE GVAKVRNLMK EKGIVKEPGI
510 520 530 540 550
STIEIENKVH EFRAGDREHS KSKEIYTMLR KISERIKSHG YVPNTNTVLQ
560 570 580 590 600
DLEETEKEQS LQVHSERLAI AYGLISTKPG SPLKIFKNLR VCSDCHTVTK
610 620 630
LISKITGRKI VMRDRNRFHH FTDGSCSCGD FW
Length:632
Mass (Da):70,096
Last modified:May 1, 2000 - v1
Checksum:i5EF31B3BD1633AC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035601 Genomic DNA Translation: CAB38205.1
AL161591 Genomic DNA Translation: CAB80403.1
CP002687 Genomic DNA Translation: AEE86786.1
PIRiT04732
RefSeqiNP_195454.1, NM_119901.2
UniGeneiAt.65465

Genome annotation databases

EnsemblPlantsiAT4G37380.1; AT4G37380.1; AT4G37380
GeneIDi829892
GrameneiAT4G37380.1; AT4G37380.1; AT4G37380
KEGGiath:AT4G37380

Keywords - Coding sequence diversityi

RNA editing

Similar proteinsi

Entry informationi

Entry nameiPP354_ARATH
AccessioniPrimary (citable) accession number: Q9SZT8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health