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Protein

Pentatricopeptide repeat-containing protein ELI1, chloroplastic

Gene

ELI1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the site 5 of ndhB1 and ndhB2 (ndhB1-5 and ndhB2-5 sites corresponding to cytidine-830), which are plastid-encoded subunits of the NADH-plastoquinone oxidoreductase. May provide the catalytic activity for editing site conversion.1 Publication

Cofactori

Zn2+1 PublicationNote: Binds 2 zinc ions per subunit.1 Publication

GO - Molecular functioni

  • RNA binding Source: UniProtKB-KW
  • zinc ion binding Source: UniProtKB

GO - Biological processi

  • chloroplast RNA modification Source: UniProtKB
  • mRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

mRNA processing

Keywords - Ligandi

Metal-binding, RNA-binding, Zinc

Enzyme and pathway databases

BioCyciARA:AT4G37830-MONOMER.
MetaCyc:AT4G37830-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein ELI1, chloroplasticCurated
Alternative name(s):
Protein EDITING LACKING INSERTIONAL MUTANT 11 Publication
Gene namesi
Name:ELI11 Publication
Synonyms:PCMP-H48
Ordered Locus Names:At4g37380
ORF Names:F6G17.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G37380.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 19ChloroplastSequence analysisAdd BLAST19
ChainiPRO_000036347120 – 632Pentatricopeptide repeat-containing protein ELI1, chloroplasticAdd BLAST613

Proteomic databases

PaxDbiQ9SZT8.

Expressioni

Gene expression databases

GenevisibleiQ9SZT8. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G37380.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SZT8.
SMRiQ9SZT8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati94 – 128PPR 1Add BLAST35
Repeati129 – 159PPR 2Add BLAST31
Repeati160 – 194PPR 3Add BLAST35
Repeati196 – 221PPR 4Add BLAST26
Repeati222 – 256PPR 5Add BLAST35
Repeati258 – 292PPR 6Add BLAST35
Repeati293 – 323PPR 7Add BLAST31
Repeati324 – 354PPR 8Add BLAST31
Repeati360 – 395PPR 9Add BLAST36
Repeati396 – 426PPR 10Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni431 – 506Type E motifAdd BLAST76
Regioni497 – 512Required for function in RNA editing1 PublicationAdd BLAST16
Regioni507 – 537Type E(+) motifAdd BLAST31
Regioni538 – 632Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SZT8.
OMAiCWNAMID.
OrthoDBiEOG093605E3.
PhylomeDBiQ9SZT8.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 5 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SZT8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSPLLATS LPQNQLSTTA TARFRLPPPE KLAVLIDKSQ SVDEVLQIHA
60 70 80 90 100
AILRHNLLLH PRYPVLNLKL HRAYASHGKI RHSLALFHQT IDPDLFLFTA
110 120 130 140 150
AINTASINGL KDQAFLLYVQ LLSSEINPNE FTFSSLLKSC STKSGKLIHT
160 170 180 190 200
HVLKFGLGID PYVATGLVDV YAKGGDVVSA QKVFDRMPER SLVSSTAMIT
210 220 230 240 250
CYAKQGNVEA ARALFDSMCE RDIVSWNVMI DGYAQHGFPN DALMLFQKLL
260 270 280 290 300
AEGKPKPDEI TVVAALSACS QIGALETGRW IHVFVKSSRI RLNVKVCTGL
310 320 330 340 350
IDMYSKCGSL EEAVLVFNDT PRKDIVAWNA MIAGYAMHGY SQDALRLFNE
360 370 380 390 400
MQGITGLQPT DITFIGTLQA CAHAGLVNEG IRIFESMGQE YGIKPKIEHY
410 420 430 440 450
GCLVSLLGRA GQLKRAYETI KNMNMDADSV LWSSVLGSCK LHGDFVLGKE
460 470 480 490 500
IAEYLIGLNI KNSGIYVLLS NIYASVGDYE GVAKVRNLMK EKGIVKEPGI
510 520 530 540 550
STIEIENKVH EFRAGDREHS KSKEIYTMLR KISERIKSHG YVPNTNTVLQ
560 570 580 590 600
DLEETEKEQS LQVHSERLAI AYGLISTKPG SPLKIFKNLR VCSDCHTVTK
610 620 630
LISKITGRKI VMRDRNRFHH FTDGSCSCGD FW
Length:632
Mass (Da):70,096
Last modified:May 1, 2000 - v1
Checksum:i5EF31B3BD1633AC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035601 Genomic DNA. Translation: CAB38205.1.
AL161591 Genomic DNA. Translation: CAB80403.1.
CP002687 Genomic DNA. Translation: AEE86786.1.
PIRiT04732.
RefSeqiNP_195454.1. NM_119901.2.
UniGeneiAt.65465.

Genome annotation databases

EnsemblPlantsiAT4G37380.1; AT4G37380.1; AT4G37380.
GeneIDi829892.
GrameneiAT4G37380.1; AT4G37380.1; AT4G37380.
KEGGiath:AT4G37380.

Keywords - Coding sequence diversityi

RNA editing

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035601 Genomic DNA. Translation: CAB38205.1.
AL161591 Genomic DNA. Translation: CAB80403.1.
CP002687 Genomic DNA. Translation: AEE86786.1.
PIRiT04732.
RefSeqiNP_195454.1. NM_119901.2.
UniGeneiAt.65465.

3D structure databases

ProteinModelPortaliQ9SZT8.
SMRiQ9SZT8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G37380.1.

Proteomic databases

PaxDbiQ9SZT8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G37380.1; AT4G37380.1; AT4G37380.
GeneIDi829892.
GrameneiAT4G37380.1; AT4G37380.1; AT4G37380.
KEGGiath:AT4G37380.

Organism-specific databases

TAIRiAT4G37380.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SZT8.
OMAiCWNAMID.
OrthoDBiEOG093605E3.
PhylomeDBiQ9SZT8.

Enzyme and pathway databases

BioCyciARA:AT4G37830-MONOMER.
MetaCyc:AT4G37830-MONOMER.

Miscellaneous databases

PROiQ9SZT8.

Gene expression databases

GenevisibleiQ9SZT8. AT.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 5 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP354_ARATH
AccessioniPrimary (citable) accession number: Q9SZT8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.