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Protein

Pentatricopeptide repeat-containing protein At4g38010

Gene

PCMP-E45

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g38010
Gene namesi
Name:PCMP-E45
Ordered Locus Names:At4g38010
ORF Names:F20D10.130
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G38010.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 559559Pentatricopeptide repeat-containing protein At4g38010PRO_0000363472Add
BLAST

Proteomic databases

PaxDbiQ9SZK1.
PRIDEiQ9SZK1.

Expressioni

Gene expression databases

GenevisibleiQ9SZK1. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G38010.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SZK1.
SMRiQ9SZK1. Positions 42-542.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati70 – 10435PPR 1Add
BLAST
Repeati105 – 13935PPR 2Add
BLAST
Repeati140 – 17031PPR 3Add
BLAST
Repeati171 – 20131PPR 4Add
BLAST
Repeati203 – 23331PPR 5Add
BLAST
Repeati238 – 26831PPR 6Add
BLAST
Repeati269 – 30436PPR 7Add
BLAST
Repeati305 – 33935PPR 8Add
BLAST
Repeati340 – 37031PPR 9Add
BLAST
Repeati371 – 40535PPR 10Add
BLAST
Repeati406 – 44035PPR 11Add
BLAST
Repeati443 – 47331PPR 12Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni478 – 55477Type E motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 12 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SZK1.
OMAiKAMPMRP.
PhylomeDBiQ9SZK1.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SZK1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYLPEKSVLL ELISRCSSLR VFKQIQTQLI TRDLLRDDLI INKVVTFLGK
60 70 80 90 100
SADFASYSSV ILHSIRSVLS SFSYNTLLSS YAVCDKPRVT IFAYKTFVSN
110 120 130 140 150
GFSPDMFTFP PVFKACGKFS GIREGKQIHG IVTKMGFYDD IYVQNSLVHF
160 170 180 190 200
YGVCGESRNA CKVFGEMPVR DVVSWTGIIT GFTRTGLYKE ALDTFSKMDV
210 220 230 240 250
EPNLATYVCV LVSSGRVGCL SLGKGIHGLI LKRASLISLE TGNALIDMYV
260 270 280 290 300
KCEQLSDAMR VFGELEKKDK VSWNSMISGL VHCERSKEAI DLFSLMQTSS
310 320 330 340 350
GIKPDGHILT SVLSACASLG AVDHGRWVHE YILTAGIKWD THIGTAIVDM
360 370 380 390 400
YAKCGYIETA LEIFNGIRSK NVFTWNALLG GLAIHGHGLE SLRYFEEMVK
410 420 430 440 450
LGFKPNLVTF LAALNACCHT GLVDEGRRYF HKMKSREYNL FPKLEHYGCM
460 470 480 490 500
IDLLCRAGLL DEALELVKAM PVKPDVRICG AILSACKNRG TLMELPKEIL
510 520 530 540 550
DSFLDIEFED SGVYVLLSNI FAANRRWDDV ARIRRLMKVK GISKVPGSSY

IEKFMTLDQ
Length:559
Mass (Da):62,434
Last modified:May 1, 2000 - v1
Checksum:i6CB954EFA6C49D5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035538 Genomic DNA. Translation: CAB37541.1.
AL161592 Genomic DNA. Translation: CAB80466.1.
CP002687 Genomic DNA. Translation: AEE86863.1.
PIRiT05628.
RefSeqiNP_195514.1. NM_119962.1.
UniGeneiAt.65469.

Genome annotation databases

EnsemblPlantsiAT4G38010.1; AT4G38010.1; AT4G38010.
GeneIDi829957.
GrameneiAT4G38010.1; AT4G38010.1; AT4G38010.
KEGGiath:AT4G38010.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035538 Genomic DNA. Translation: CAB37541.1.
AL161592 Genomic DNA. Translation: CAB80466.1.
CP002687 Genomic DNA. Translation: AEE86863.1.
PIRiT05628.
RefSeqiNP_195514.1. NM_119962.1.
UniGeneiAt.65469.

3D structure databases

ProteinModelPortaliQ9SZK1.
SMRiQ9SZK1. Positions 42-542.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G38010.1.

Proteomic databases

PaxDbiQ9SZK1.
PRIDEiQ9SZK1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G38010.1; AT4G38010.1; AT4G38010.
GeneIDi829957.
GrameneiAT4G38010.1; AT4G38010.1; AT4G38010.
KEGGiath:AT4G38010.

Organism-specific databases

TAIRiAT4G38010.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SZK1.
OMAiKAMPMRP.
PhylomeDBiQ9SZK1.

Miscellaneous databases

PROiQ9SZK1.

Gene expression databases

GenevisibleiQ9SZK1. AT.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  4. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP355_ARATH
AccessioniPrimary (citable) accession number: Q9SZK1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: February 17, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.