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Protein

Agamous-like MADS-box protein AGL21

Gene

AGL21

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • RNA polymerase II regulatory region sequence-specific DNA binding Source: InterPro
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription factor binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL21
Gene namesi
Name:AGL21
Ordered Locus Names:At4g37940
ORF Names:F20D10.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G37940.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994791 – 228Agamous-like MADS-box protein AGL21Add BLAST228

Proteomic databases

PaxDbiQ9SZJ6.

Expressioni

Tissue specificityi

Specifically expressed in root.1 Publication

Developmental stagei

Primarily expressed during lateral root formation and embryogenesis.1 Publication

Gene expression databases

ExpressionAtlasiQ9SZJ6. baseline and differential.
GenevisibleiQ9SZJ6. AT.

Interactioni

Subunit structurei

Interacts with AGL15, AGL16 and AGL19 (PubMed:15805477). Interacts with SIEL (PubMed:21924907).2 Publications

GO - Molecular functioni

  • transcription factor binding Source: UniProtKB

Protein-protein interaction databases

BioGridi15231. 21 interactors.
IntActiQ9SZJ6. 25 interactors.
STRINGi3702.AT4G37940.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SZJ6.
SMRiQ9SZJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini86 – 176K-boxPROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Contains 1 K-box domain.PROSITE-ProRule annotation
Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ9SZJ6.
OMAiQPEHSDY.
OrthoDBiEOG09360MHP.
PhylomeDBiQ9SZJ6.

Family and domain databases

CDDicd00265. MADS_MEF2_like. 1 hit.
InterProiIPR033896. MADS_MEF2-like.
IPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SZJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS
60 70 80 90 100
TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
110 120 130 140 150
HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ
160 170 180 190 200
ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
210 220
DDESHTQIRL QLSQPEHSDY DTPPRANE
Length:228
Mass (Da):26,411
Last modified:May 1, 2000 - v1
Checksum:i87077BFE6CC4F7A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF336979 mRNA. Translation: AAL73213.1.
AL035538 Genomic DNA. Translation: CAB37534.1.
AL161592 Genomic DNA. Translation: CAB80459.1.
CP002687 Genomic DNA. Translation: AEE86856.1.
PIRiT05621.
RefSeqiNP_195507.1. NM_119955.3.
UniGeneiAt.28801.

Genome annotation databases

EnsemblPlantsiAT4G37940.1; AT4G37940.1; AT4G37940.
GeneIDi829950.
GrameneiAT4G37940.1; AT4G37940.1; AT4G37940.
KEGGiath:AT4G37940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF336979 mRNA. Translation: AAL73213.1.
AL035538 Genomic DNA. Translation: CAB37534.1.
AL161592 Genomic DNA. Translation: CAB80459.1.
CP002687 Genomic DNA. Translation: AEE86856.1.
PIRiT05621.
RefSeqiNP_195507.1. NM_119955.3.
UniGeneiAt.28801.

3D structure databases

ProteinModelPortaliQ9SZJ6.
SMRiQ9SZJ6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi15231. 21 interactors.
IntActiQ9SZJ6. 25 interactors.
STRINGi3702.AT4G37940.1.

Proteomic databases

PaxDbiQ9SZJ6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G37940.1; AT4G37940.1; AT4G37940.
GeneIDi829950.
GrameneiAT4G37940.1; AT4G37940.1; AT4G37940.
KEGGiath:AT4G37940.

Organism-specific databases

TAIRiAT4G37940.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ9SZJ6.
OMAiQPEHSDY.
OrthoDBiEOG09360MHP.
PhylomeDBiQ9SZJ6.

Miscellaneous databases

PROiQ9SZJ6.

Gene expression databases

ExpressionAtlasiQ9SZJ6. baseline and differential.
GenevisibleiQ9SZJ6. AT.

Family and domain databases

CDDicd00265. MADS_MEF2_like. 1 hit.
InterProiIPR033896. MADS_MEF2-like.
IPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL21_ARATH
AccessioniPrimary (citable) accession number: Q9SZJ6
Secondary accession number(s): Q548I8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.