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Protein

Agamous-like MADS-box protein AGL21

Gene

AGL21

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • DNA binding transcription factor activity Source: TAIR
  • protein dimerization activity Source: InterPro
  • RNA polymerase II regulatory region sequence-specific DNA binding Source: InterPro
  • transcription factor binding Source: UniProtKB

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL21
Gene namesi
Name:AGL21
Ordered Locus Names:At4g37940
ORF Names:F20D10.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G37940
TAIRilocus:2121070 AT4G37940

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994791 – 228Agamous-like MADS-box protein AGL21Add BLAST228

Proteomic databases

PaxDbiQ9SZJ6

Expressioni

Tissue specificityi

Specifically expressed in root.1 Publication

Developmental stagei

Primarily expressed during lateral root formation and embryogenesis.1 Publication

Gene expression databases

ExpressionAtlasiQ9SZJ6 baseline and differential
GenevisibleiQ9SZJ6 AT

Interactioni

Subunit structurei

Interacts with AGL15, AGL16 and AGL19 (PubMed:15805477). Interacts with SIEL (PubMed:21924907).2 Publications

Binary interactionsi

Show more details

GO - Molecular functioni

  • protein dimerization activity Source: InterPro
  • transcription factor binding Source: UniProtKB

Protein-protein interaction databases

BioGridi15231, 21 interactors
IntActiQ9SZJ6, 41 interactors
STRINGi3702.AT4G37940.1

Structurei

3D structure databases

ProteinModelPortaliQ9SZJ6
SMRiQ9SZJ6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini86 – 176K-boxPROSITE-ProRule annotationAdd BLAST91

Phylogenomic databases

eggNOGiKOG0014 Eukaryota
COG5068 LUCA
HOGENOMiHOG000155301
InParanoidiQ9SZJ6
OMAiYLIHQEN
OrthoDBiEOG09360MHP
PhylomeDBiQ9SZJ6

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033896 MADS_MEF2-like
IPR002487 TF_Kbox
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF01486 K-box, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS51297 K_BOX, 1 hit
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SZJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS
60 70 80 90 100
TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
110 120 130 140 150
HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ
160 170 180 190 200
ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
210 220
DDESHTQIRL QLSQPEHSDY DTPPRANE
Length:228
Mass (Da):26,411
Last modified:May 1, 2000 - v1
Checksum:i87077BFE6CC4F7A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF336979 mRNA Translation: AAL73213.1
AL035538 Genomic DNA Translation: CAB37534.1
AL161592 Genomic DNA Translation: CAB80459.1
CP002687 Genomic DNA Translation: AEE86856.1
PIRiT05621
RefSeqiNP_195507.1, NM_119955.3
UniGeneiAt.28801

Genome annotation databases

EnsemblPlantsiAT4G37940.1; AT4G37940.1; AT4G37940
GeneIDi829950
GrameneiAT4G37940.1; AT4G37940.1; AT4G37940
KEGGiath:AT4G37940

Similar proteinsi

Entry informationi

Entry nameiAGL21_ARATH
AccessioniPrimary (citable) accession number: Q9SZJ6
Secondary accession number(s): Q548I8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 136 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

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