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Protein

Glycerophosphodiester phosphodiesterase GDPDL3

Gene

GDPDL3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Involved in primary cell wall organization. Required for the accumulation of crystalline cellulose.1 Publication

Catalytic activityi

A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.By similarity

GO - Molecular functioni

GO - Biological processi

  • cell tip growth Source: TAIR
  • glycerol metabolic process Source: UniProtKB-KW
  • guard cell morphogenesis Source: TAIR
  • lipid metabolic process Source: InterPro
  • plant-type cell wall cellulose metabolic process Source: TAIR
  • root epidermal cell differentiation Source: TAIR
  • root hair cell differentiation Source: TAIR
  • trichome differentiation Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Cell wall biogenesis/degradation, Glycerol metabolism

Names & Taxonomyi

Protein namesi
Recommended name:
Glycerophosphodiester phosphodiesterase GDPDL3Curated (EC:3.1.4.46By similarity)
Alternative name(s):
Glycerophosphodiester phosphodiesterase-like 31 Publication
Short name:
ATGDPDL31 Publication
Glycerophosphodiesterase-like 21 Publication
Protein MUTANT ROOT HAIR 51 Publication
Protein SHAVEN 31 Publication
Gene namesi
Name:GDPDL31 Publication
Synonyms:GPDL21 Publication, MRH51 Publication, SHV31 Publication
Ordered Locus Names:At4g26690
ORF Names:F10M23.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G26690.

Subcellular locationi

GO - Cellular componenti

  • anchored component of membrane Source: TAIR
  • anchored component of plasma membrane Source: TAIR
  • plant-type cell wall Source: TAIR
  • plasma membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

Defective in root hair formation (PubMed:16367956, PubMed:18718934). This phenotype is partially suprressed by application of exogenous borate (PubMed:18718934).2 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_000001259928 – 730Glycerophosphodiester phosphodiesterase GDPDL3Add BLAST703
PropeptideiPRO_0000012600731 – 759Removed in mature formCuratedAdd BLAST29

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...)Sequence analysis1
Glycosylationi186N-linked (GlcNAc...)Sequence analysis1
Glycosylationi242N-linked (GlcNAc...)Sequence analysis1
Glycosylationi251N-linked (GlcNAc...)Sequence analysis1
Glycosylationi326N-linked (GlcNAc...)Sequence analysis1
Glycosylationi353N-linked (GlcNAc...)Sequence analysis1
Glycosylationi413N-linked (GlcNAc...)Sequence analysis1
Glycosylationi424N-linked (GlcNAc...)Sequence analysis1
Glycosylationi488N-linked (GlcNAc...)Sequence analysis1
Glycosylationi528N-linked (GlcNAc...)Sequence analysis1
Glycosylationi540N-linked (GlcNAc...)Sequence analysis1
Glycosylationi647N-linked (GlcNAc...)Sequence analysis1
Lipidationi730GPI-anchor amidated asparagineCurated1

Keywords - PTMi

Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

PaxDbiQ9SZ11.
PRIDEiQ9SZ11.

Expressioni

Tissue specificityi

Expressed in roots, shoots, rosette and cauline leaves, stems, flowers and siliques.2 Publications

Gene expression databases

GenevisibleiQ9SZ11. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G26690.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SZ11.
SMRiQ9SZ11.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini44 – 344GP-PDE 1Add BLAST301
Domaini360 – 661GP-PDE 2Add BLAST302

Sequence similaritiesi

Contains 2 GP-PDE domains.Curated

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiKOG2258. Eukaryota.
COG0584. LUCA.
HOGENOMiHOG000239205.
InParanoidiQ9SZ11.
OMAiIMISVEH.
OrthoDBiEOG0936037L.

Family and domain databases

Gene3Di3.20.20.190. 2 hits.
InterProiIPR030395. GP_PDE_dom.
IPR017946. PLC-like_Pdiesterase_TIM-brl.
[Graphical view]
PfamiPF03009. GDPD. 1 hit.
[Graphical view]
SUPFAMiSSF51695. SSF51695. 2 hits.
PROSITEiPS51704. GP_PDE. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SZ11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGLLRASSL LLCGVILIQL LAAQIHAQSK KPKSPWPTLT GDPPLVIARG
60 70 80 90 100
GFSGLFPDSS YDAYNFAILT SVPDAVLWCD VQLTKDALGI CFPDLTMRNS
110 120 130 140 150
SSIEAVYPTR QKSYPVNGVP TSGWFTIDFS LKDLKDVNLI RGILSRSEKF
160 170 180 190 200
DGNSNPIMTV QSVSTQMKPS FFWLNVQHDA FYAQHNLSMS SFLVAASKTV
210 220 230 240 250
LIDFISSPEV NFFKKIAGRF GRNGPSLVFR FLGQDEFEPT TNRTYGSILS
260 270 280 290 300
NLTFVKTFAS GILVPKSYIL PLDDQQYLLP HTSLVQDAHK AGLEVFVSGF
310 320 330 340 350
ANDIDIAHDY SFDPVSEYLS FVDNGNFSVD GVLSDFPITA SASLDCFSHV
360 370 380 390 400
GRNATKQVDF LVITKDGASG DYPGCTDLAY KKAIKDGADV IDCSVQLSSD
410 420 430 440 450
GTPFCLSSID LGNSTTVSLT AFRNRSTTVP ELGSLGAIYT FSLTWAEIQT
460 470 480 490 500
LTPAISNPYR VTSLFRNPKQ KNAGKLFSLS DFLSLAKNST SLSGVLISVE
510 520 530 540 550
NAAYLREEQG LDVVKAVLDT LTQTGYSNST ATKVMIQSTN SSVLVDFKKQ
560 570 580 590 600
SQYETVYKVE ENIRDILDSA IEDIKKFADA VVIQKLSVFP VAQSFITTQT
610 620 630 640 650
NVVEKLQKSQ LPVYVELFQN EFLSQPYDFF ADATVEINSY ITGAGINGTI
660 670 680 690 700
TEFPFTAARY KRNLCLGRKE TIPYMAPAQP GALLTLVSPT AFPPAEAPNP
710 720 730 740 750
VFTDADVTEP PLPPVTAKAP TSSPGTPSTN AQAPSGQTRI TLSLLLSVFA

MVLASLLLL
Length:759
Mass (Da):82,562
Last modified:May 3, 2011 - v3
Checksum:iC20B45292AD1B068
GO

Sequence cautioni

The sequence CAB36515 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79524 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti148E → K in AAL07129 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035440 Genomic DNA. Translation: CAB36515.1. Sequence problems.
AL161565 Genomic DNA. Translation: CAB79524.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE85238.1.
AY056280 mRNA. Translation: AAL07129.1.
PIRiT04792.
RefSeqiNP_567755.1. NM_118803.5.
UniGeneiAt.23755.
At.71071.

Genome annotation databases

EnsemblPlantsiAT4G26690.1; AT4G26690.1; AT4G26690.
GeneIDi828776.
GrameneiAT4G26690.1; AT4G26690.1; AT4G26690.
KEGGiath:AT4G26690.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035440 Genomic DNA. Translation: CAB36515.1. Sequence problems.
AL161565 Genomic DNA. Translation: CAB79524.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE85238.1.
AY056280 mRNA. Translation: AAL07129.1.
PIRiT04792.
RefSeqiNP_567755.1. NM_118803.5.
UniGeneiAt.23755.
At.71071.

3D structure databases

ProteinModelPortaliQ9SZ11.
SMRiQ9SZ11.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G26690.1.

Proteomic databases

PaxDbiQ9SZ11.
PRIDEiQ9SZ11.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G26690.1; AT4G26690.1; AT4G26690.
GeneIDi828776.
GrameneiAT4G26690.1; AT4G26690.1; AT4G26690.
KEGGiath:AT4G26690.

Organism-specific databases

TAIRiAT4G26690.

Phylogenomic databases

eggNOGiKOG2258. Eukaryota.
COG0584. LUCA.
HOGENOMiHOG000239205.
InParanoidiQ9SZ11.
OMAiIMISVEH.
OrthoDBiEOG0936037L.

Miscellaneous databases

PROiQ9SZ11.

Gene expression databases

GenevisibleiQ9SZ11. AT.

Family and domain databases

Gene3Di3.20.20.190. 2 hits.
InterProiIPR030395. GP_PDE_dom.
IPR017946. PLC-like_Pdiesterase_TIM-brl.
[Graphical view]
PfamiPF03009. GDPD. 1 hit.
[Graphical view]
SUPFAMiSSF51695. SSF51695. 2 hits.
PROSITEiPS51704. GP_PDE. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGPDL3_ARATH
AccessioniPrimary (citable) accession number: Q9SZ11
Secondary accession number(s): Q93ZT1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: May 3, 2011
Last modified: November 30, 2016
This is version 107 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.