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Protein

Glycerophosphodiester phosphodiesterase GDPDL3

Gene

GDPDL3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in primary cell wall organization. Required for the accumulation of crystalline cellulose.1 Publication

Catalytic activityi

A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.By similarity

GO - Molecular functioni

GO - Biological processi

  • cell tip growth Source: TAIR
  • glycerol metabolic process Source: UniProtKB-KW
  • guard cell morphogenesis Source: TAIR
  • lipid metabolic process Source: InterPro
  • plant-type cell wall cellulose metabolic process Source: TAIR
  • root epidermal cell differentiation Source: TAIR
  • root hair cell differentiation Source: TAIR
  • trichome differentiation Source: TAIR

Keywordsi

Molecular functionHydrolase
Biological processCell wall biogenesis/degradation, Glycerol metabolism

Names & Taxonomyi

Protein namesi
Recommended name:
Glycerophosphodiester phosphodiesterase GDPDL3Curated (EC:3.1.4.46By similarity)
Alternative name(s):
Glycerophosphodiester phosphodiesterase-like 31 Publication
Short name:
ATGDPDL31 Publication
Glycerophosphodiesterase-like 21 Publication
Protein MUTANT ROOT HAIR 51 Publication
Protein SHAVEN 31 Publication
Gene namesi
Name:GDPDL31 Publication
Synonyms:GPDL21 Publication, MRH51 Publication, SHV31 Publication
Ordered Locus Names:At4g26690
ORF Names:F10M23.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G26690
TAIRilocus:2116377 AT4G26690

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini28 – 738ExtracellularSequence analysisAdd BLAST711
Transmembranei739 – 759HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

Defective in root hair formation (PubMed:16367956, PubMed:18718934). This phenotype is partially suppressed by application of exogenous borate (PubMed:18718934).2 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_000001259928 – 759Glycerophosphodiester phosphodiesterase GDPDL3Add BLAST732

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi186N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi242N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi251N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi326N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi353N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi413N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi424N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi488N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi528N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi540N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi647N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9SZ11
PRIDEiQ9SZ11

Expressioni

Tissue specificityi

Expressed in roots, shoots, rosette and cauline leaves, stems, flowers and siliques.2 Publications

Gene expression databases

ExpressionAtlasiQ9SZ11 baseline and differential
GenevisibleiQ9SZ11 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G26690.1

Structurei

3D structure databases

ProteinModelPortaliQ9SZ11
SMRiQ9SZ11
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini44 – 344GP-PDE 1Add BLAST301
Domaini360 – 661GP-PDE 2Add BLAST302

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2258 Eukaryota
COG0584 LUCA
HOGENOMiHOG000239205
InParanoidiQ9SZ11
OMAiQTVNKEM
OrthoDBiEOG0936037L

Family and domain databases

Gene3Di3.20.20.190, 2 hits
InterProiView protein in InterPro
IPR030395 GP_PDE_dom
IPR017946 PLC-like_Pdiesterase_TIM-brl
PfamiView protein in Pfam
PF03009 GDPD, 1 hit
SUPFAMiSSF51695 SSF51695, 2 hits
PROSITEiView protein in PROSITE
PS51704 GP_PDE, 2 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SZ11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGLLRASSL LLCGVILIQL LAAQIHAQSK KPKSPWPTLT GDPPLVIARG
60 70 80 90 100
GFSGLFPDSS YDAYNFAILT SVPDAVLWCD VQLTKDALGI CFPDLTMRNS
110 120 130 140 150
SSIEAVYPTR QKSYPVNGVP TSGWFTIDFS LKDLKDVNLI RGILSRSEKF
160 170 180 190 200
DGNSNPIMTV QSVSTQMKPS FFWLNVQHDA FYAQHNLSMS SFLVAASKTV
210 220 230 240 250
LIDFISSPEV NFFKKIAGRF GRNGPSLVFR FLGQDEFEPT TNRTYGSILS
260 270 280 290 300
NLTFVKTFAS GILVPKSYIL PLDDQQYLLP HTSLVQDAHK AGLEVFVSGF
310 320 330 340 350
ANDIDIAHDY SFDPVSEYLS FVDNGNFSVD GVLSDFPITA SASLDCFSHV
360 370 380 390 400
GRNATKQVDF LVITKDGASG DYPGCTDLAY KKAIKDGADV IDCSVQLSSD
410 420 430 440 450
GTPFCLSSID LGNSTTVSLT AFRNRSTTVP ELGSLGAIYT FSLTWAEIQT
460 470 480 490 500
LTPAISNPYR VTSLFRNPKQ KNAGKLFSLS DFLSLAKNST SLSGVLISVE
510 520 530 540 550
NAAYLREEQG LDVVKAVLDT LTQTGYSNST ATKVMIQSTN SSVLVDFKKQ
560 570 580 590 600
SQYETVYKVE ENIRDILDSA IEDIKKFADA VVIQKLSVFP VAQSFITTQT
610 620 630 640 650
NVVEKLQKSQ LPVYVELFQN EFLSQPYDFF ADATVEINSY ITGAGINGTI
660 670 680 690 700
TEFPFTAARY KRNLCLGRKE TIPYMAPAQP GALLTLVSPT AFPPAEAPNP
710 720 730 740 750
VFTDADVTEP PLPPVTAKAP TSSPGTPSTN AQAPSGQTRI TLSLLLSVFA

MVLASLLLL
Length:759
Mass (Da):82,562
Last modified:May 3, 2011 - v3
Checksum:iC20B45292AD1B068
GO

Sequence cautioni

The sequence CAB36515 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79524 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti148E → K in AAL07129 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035440 Genomic DNA Translation: CAB36515.1 Sequence problems.
AL161565 Genomic DNA Translation: CAB79524.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE85238.1
AY056280 mRNA Translation: AAL07129.1
PIRiT04792
RefSeqiNP_567755.1, NM_118803.5
UniGeneiAt.23755
At.71071

Genome annotation databases

EnsemblPlantsiAT4G26690.1; AT4G26690.1; AT4G26690
GeneIDi828776
GrameneiAT4G26690.1; AT4G26690.1; AT4G26690
KEGGiath:AT4G26690

Similar proteinsi

Entry informationi

Entry nameiGPDL3_ARATH
AccessioniPrimary (citable) accession number: Q9SZ11
Secondary accession number(s): Q93ZT1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: May 3, 2011
Last modified: May 23, 2018
This is version 117 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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