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Protein

Zinc finger CCCH domain-containing protein 5

Gene

At1g10320

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 268C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri374 – 404C3H1-type 2PROSITE-ProRule annotationAdd BLAST31

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, RNA-binding
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-ATH-72165 mRNA Splicing - Minor Pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 5
Short name:
AtC3H5
Gene namesi
Ordered Locus Names:At1g10320
ORF Names:F14N23.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G10320
TAIRilocus:2012843 AT1G10320

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003719661 – 757Zinc finger CCCH domain-containing protein 5Add BLAST757

Proteomic databases

PaxDbiQ9SY74

PTM databases

iPTMnetiQ9SY74

Expressioni

Gene expression databases

ExpressionAtlasiQ9SY74 baseline and differential
GenevisibleiQ9SY74 AT

Interactioni

Protein-protein interaction databases

BioGridi22811, 1 interactor
STRINGi3702.AT1G10320.1

Structurei

3D structure databases

ProteinModelPortaliQ9SY74
SMRiQ9SY74
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini295 – 372RRMPROSITE-ProRule annotationAdd BLAST78

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi2 – 159Glu-richAdd BLAST158

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 268C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri374 – 404C3H1-type 2PROSITE-ProRule annotationAdd BLAST31

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG2202 Eukaryota
ENOG410Z5PX LUCA
HOGENOMiHOG000083070
InParanoidiQ9SY74
OMAiEAEHCYE
OrthoDBiEOG09360ALV
PhylomeDBiQ9SY74

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
IPR009145 U2AF_small
IPR000571 Znf_CCCH
PANTHERiPTHR12620 PTHR12620, 3 hits
PfamiView protein in Pfam
PF00642 zf-CCCH, 2 hits
PRINTSiPR01848 U2AUXFACTOR
SMARTiView protein in SMART
SM00361 RRM_1, 1 hit
SM00356 ZnF_C3H1, 2 hits
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
PS50103 ZF_C3H1, 2 hits

Sequencei

Sequence statusi: Complete.

Q9SY74-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV
60 70 80 90 100
RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
110 120 130 140 150
REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY
160 170 180 190 200
EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
210 220 230 240 250
RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL
260 270 280 290 300
KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
310 320 330 340 350
ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL
360 370 380 390 400
AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
410 420 430 440 450
HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS
460 470 480 490 500
ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
510 520 530 540 550
RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV
560 570 580 590 600
GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
610 620 630 640 650
THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS
660 670 680 690 700
HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
710 720 730 740 750
SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE

IERWRPV
Length:757
Mass (Da):89,065
Last modified:May 5, 2009 - v2
Checksum:i2C15243CC1A93FD7
GO

Sequence cautioni

The sequence AAD32882 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAE98791 differs from that shown. Intron retention.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005489 Genomic DNA Translation: AAD32882.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE28565.1
AK226684 mRNA Translation: BAE98791.1 Sequence problems.
RefSeqiNP_172503.1, NM_100906.1
UniGeneiAt.51551

Genome annotation databases

EnsemblPlantsiAT1G10320.1; AT1G10320.1; AT1G10320
GeneIDi837571
GrameneiAT1G10320.1; AT1G10320.1; AT1G10320
KEGGiath:AT1G10320

Similar proteinsi

Entry informationi

Entry nameiC3H5_ARATH
AccessioniPrimary (citable) accession number: Q9SY74
Secondary accession number(s): Q0WVQ7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 5, 2009
Last modified: May 23, 2018
This is version 111 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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