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Protein

Zinc finger CCCH domain-containing protein 5

Gene

At1g10320

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 268C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri374 – 404C3H1-type 2PROSITE-ProRule annotationAdd BLAST31

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-binding, Metal-binding, RNA-binding, Zinc

Enzyme and pathway databases

ReactomeiR-ATH-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 5
Short name:
AtC3H5
Gene namesi
Ordered Locus Names:At1g10320
ORF Names:F14N23.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G10320.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003719661 – 757Zinc finger CCCH domain-containing protein 5Add BLAST757

Proteomic databases

PaxDbiQ9SY74.
PRIDEiQ9SY74.

PTM databases

iPTMnetiQ9SY74.

Expressioni

Gene expression databases

GenevisibleiQ9SY74. AT.

Interactioni

Protein-protein interaction databases

BioGridi22811. 1 interactor.
STRINGi3702.AT1G10320.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SY74.
SMRiQ9SY74.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini295 – 372RRMPROSITE-ProRule annotationAdd BLAST78

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi2 – 159Glu-richAdd BLAST158

Sequence similaritiesi

Contains 2 C3H1-type zinc fingers.PROSITE-ProRule annotation
Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 268C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri374 – 404C3H1-type 2PROSITE-ProRule annotationAdd BLAST31

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG2202. Eukaryota.
ENOG410Z5PX. LUCA.
HOGENOMiHOG000083070.
InParanoidiQ9SY74.
OMAiKERRYAK.
OrthoDBiEOG09360ALV.
PhylomeDBiQ9SY74.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR009145. U2AF_small.
IPR000571. Znf_CCCH.
[Graphical view]
PANTHERiPTHR12620. PTHR12620. 3 hits.
PfamiPF00642. zf-CCCH. 2 hits.
[Graphical view]
PRINTSiPR01848. U2AUXFACTOR.
SMARTiSM00361. RRM_1. 1 hit.
SM00356. ZnF_C3H1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
PS50103. ZF_C3H1. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SY74-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV
60 70 80 90 100
RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
110 120 130 140 150
REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY
160 170 180 190 200
EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
210 220 230 240 250
RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL
260 270 280 290 300
KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
310 320 330 340 350
ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL
360 370 380 390 400
AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
410 420 430 440 450
HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS
460 470 480 490 500
ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
510 520 530 540 550
RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV
560 570 580 590 600
GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
610 620 630 640 650
THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS
660 670 680 690 700
HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
710 720 730 740 750
SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE

IERWRPV
Length:757
Mass (Da):89,065
Last modified:May 5, 2009 - v2
Checksum:i2C15243CC1A93FD7
GO

Sequence cautioni

The sequence AAD32882 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAE98791 differs from that shown. Intron retention.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005489 Genomic DNA. Translation: AAD32882.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28565.1.
AK226684 mRNA. Translation: BAE98791.1. Sequence problems.
RefSeqiNP_172503.1. NM_100906.1.
UniGeneiAt.51551.

Genome annotation databases

EnsemblPlantsiAT1G10320.1; AT1G10320.1; AT1G10320.
GeneIDi837571.
GrameneiAT1G10320.1; AT1G10320.1; AT1G10320.
KEGGiath:AT1G10320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005489 Genomic DNA. Translation: AAD32882.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28565.1.
AK226684 mRNA. Translation: BAE98791.1. Sequence problems.
RefSeqiNP_172503.1. NM_100906.1.
UniGeneiAt.51551.

3D structure databases

ProteinModelPortaliQ9SY74.
SMRiQ9SY74.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22811. 1 interactor.
STRINGi3702.AT1G10320.1.

PTM databases

iPTMnetiQ9SY74.

Proteomic databases

PaxDbiQ9SY74.
PRIDEiQ9SY74.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G10320.1; AT1G10320.1; AT1G10320.
GeneIDi837571.
GrameneiAT1G10320.1; AT1G10320.1; AT1G10320.
KEGGiath:AT1G10320.

Organism-specific databases

TAIRiAT1G10320.

Phylogenomic databases

eggNOGiKOG2202. Eukaryota.
ENOG410Z5PX. LUCA.
HOGENOMiHOG000083070.
InParanoidiQ9SY74.
OMAiKERRYAK.
OrthoDBiEOG09360ALV.
PhylomeDBiQ9SY74.

Enzyme and pathway databases

ReactomeiR-ATH-72165. mRNA Splicing - Minor Pathway.

Miscellaneous databases

PROiQ9SY74.

Gene expression databases

GenevisibleiQ9SY74. AT.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR009145. U2AF_small.
IPR000571. Znf_CCCH.
[Graphical view]
PANTHERiPTHR12620. PTHR12620. 3 hits.
PfamiPF00642. zf-CCCH. 2 hits.
[Graphical view]
PRINTSiPR01848. U2AUXFACTOR.
SMARTiSM00361. RRM_1. 1 hit.
SM00356. ZnF_C3H1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
PS50103. ZF_C3H1. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC3H5_ARATH
AccessioniPrimary (citable) accession number: Q9SY74
Secondary accession number(s): Q0WVQ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 5, 2009
Last modified: November 2, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.