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Protein

60S ribosomal protein L13a-3

Gene

RPL13AC

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13a-3
Gene namesi
Name:RPL13AC
Ordered Locus Names:At4g13170
ORF Names:F17N18.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G13170.
TAIRilocus:2119335. AT4G13170.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • membrane Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337821 – 20660S ribosomal protein L13a-3Add BLAST206

Proteomic databases

PaxDbiQ9SVR0.
PRIDEiQ9SVR0.

PTM databases

iPTMnetiQ9SVR0.

Expressioni

Gene expression databases

GenevisibleiQ9SVR0. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G13170.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SVR0.
SMRiQ9SVR0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3204. Eukaryota.
COG0102. LUCA.
HOGENOMiHOG000225289.
InParanoidiQ9SVR0.
KOiK02872.
OMAiKHNREMK.
OrthoDBiEOG09360MBP.
PhylomeDBiQ9SVR0.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF8. PTHR11545:SF8. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9SVR0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG
60 70 80 90 100
GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
110 120 130 140 150
AAALARLKVF EGIPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGRLSSEV
160 170 180 190 200
GWNHYDTIKE LETKRKERSQ VMYERKKQLN KLRTKAEKVA EERLGSQLDV

LAPVKY
Length:206
Mass (Da):23,629
Last modified:May 1, 2000 - v1
Checksum:iFD43271D5F81F3B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049751 Genomic DNA. Translation: CAB41927.1.
AL161535 Genomic DNA. Translation: CAB78359.1.
CP002687 Genomic DNA. Translation: AEE83240.1.
AY052263 mRNA. Translation: AAK97733.1.
AY060518 mRNA. Translation: AAL31131.1.
PIRiT07697.
RefSeqiNP_193053.1. NM_117386.5.
UniGeneiAt.3259.

Genome annotation databases

EnsemblPlantsiAT4G13170.1; AT4G13170.1; AT4G13170.
GeneIDi826931.
GrameneiAT4G13170.1; AT4G13170.1; AT4G13170.
KEGGiath:AT4G13170.

Similar proteinsi

Entry informationi

Entry nameiR13A3_ARATH
AccessioniPrimary (citable) accession number: Q9SVR0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: May 1, 2000
Last modified: June 7, 2017
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families