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Protein

60S ribosomal protein L13a-3

Gene

RPL13AC

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13a-3
Gene namesi
Name:RPL13AC
Ordered Locus Names:At4g13170
ORF Names:F17N18.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G13170
TAIRilocus:2119335 AT4G13170

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337821 – 20660S ribosomal protein L13a-3Add BLAST206

Proteomic databases

PaxDbiQ9SVR0
PRIDEiQ9SVR0

PTM databases

iPTMnetiQ9SVR0

Expressioni

Gene expression databases

ExpressionAtlasiQ9SVR0 differential
GenevisibleiQ9SVR0 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G13170.1

Structurei

3D structure databases

ProteinModelPortaliQ9SVR0
SMRiQ9SVR0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3204 Eukaryota
COG0102 LUCA
HOGENOMiHOG000225289
InParanoidiQ9SVR0
KOiK02872
OMAiCCQGINI
OrthoDBiEOG09360MBP
PhylomeDBiQ9SVR0

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SVR0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG
60 70 80 90 100
GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
110 120 130 140 150
AAALARLKVF EGIPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGRLSSEV
160 170 180 190 200
GWNHYDTIKE LETKRKERSQ VMYERKKQLN KLRTKAEKVA EERLGSQLDV

LAPVKY
Length:206
Mass (Da):23,629
Last modified:May 1, 2000 - v1
Checksum:iFD43271D5F81F3B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049751 Genomic DNA Translation: CAB41927.1
AL161535 Genomic DNA Translation: CAB78359.1
CP002687 Genomic DNA Translation: AEE83240.1
AY052263 mRNA Translation: AAK97733.1
AY060518 mRNA Translation: AAL31131.1
PIRiT07697
RefSeqiNP_193053.1, NM_117386.5
UniGeneiAt.3259

Genome annotation databases

EnsemblPlantsiAT4G13170.1; AT4G13170.1; AT4G13170
GeneIDi826931
GrameneiAT4G13170.1; AT4G13170.1; AT4G13170
KEGGiath:AT4G13170

Similar proteinsi

Entry informationi

Entry nameiR13A3_ARATH
AccessioniPrimary (citable) accession number: Q9SVR0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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