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Protein

Dof zinc finger protein DOF3.5

Gene

DOF3.5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri25 – 79Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA binding transcription factor activity Source: TAIR
  • metal ion binding Source: UniProtKB-KW

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.5
Short name:
AtDOF3.5
Gene namesi
Name:DOF3.5
Ordered Locus Names:At3g52440
ORF Names:F22O6_180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G52440
TAIRilocus:2079954 AT3G52440

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742811 – 247Dof zinc finger protein DOF3.5Add BLAST247

Proteomic databases

PaxDbiQ9SVC5
PRIDEiQ9SVC5

Expressioni

Gene expression databases

ExpressionAtlasiQ9SVC5 baseline

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G52440.1

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri25 – 79Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410J03D Eukaryota
ENOG410YMWI LUCA
InParanoidiQ9SVC5
OMAiDINDGHH
OrthoDBiEOG09360G19
PhylomeDBiQ9SVC5

Family and domain databases

InterProiView protein in InterPro
IPR003851 Znf_Dof
PfamiView protein in Pfam
PF02701 zf-Dof, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD007478 Znf_Dof, 1 hit
PROSITEiView protein in PROSITE
PS01361 ZF_DOF_1, 1 hit
PS50884 ZF_DOF_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SVC5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERAEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY
60 70 80 90 100
FCKGCRRYWT KGGSLRNVPV GGGCRKSRRP KSSSGNNTKT SLTANSGNPG
110 120 130 140 150
GGSPSIDLAL VYANFLNPKP DESILQENCD LATTDFLVDN PTGTSMDPSW
160 170 180 190 200
SMDINDGHHD HYINPVEHIV EECGYNGLPP FPGEELLSLD TNGVWSDALL
210 220 230 240
IGHNHVDVGV TPVQAVHEPV VHFADESNDS TNLLFGSWSP FDFTADG
Length:247
Mass (Da):26,936
Last modified:May 1, 2000 - v1
Checksum:iF4BE07549809B116
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL050300 Genomic DNA Translation: CAB43436.1
CP002686 Genomic DNA Translation: AEE78946.1
PIRiT08455
RefSeqiNP_190812.1, NM_115104.2
UniGeneiAt.53903

Genome annotation databases

EnsemblPlantsiAT3G52440.1; AT3G52440.1; AT3G52440
AT3G52440.2; AT3G52440.2; AT3G52440
GeneIDi824409
GrameneiAT3G52440.1; AT3G52440.1; AT3G52440
AT3G52440.2; AT3G52440.2; AT3G52440
KEGGiath:AT3G52440

Similar proteinsi

Entry informationi

Entry nameiDOF35_ARATH
AccessioniPrimary (citable) accession number: Q9SVC5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

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