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Protein

Dof zinc finger protein DOF3.5

Gene

DOF3.5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri25 – 79Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.5
Short name:
AtDOF3.5
Gene namesi
Name:DOF3.5
Ordered Locus Names:At3g52440
ORF Names:F22O6_180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G52440.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742811 – 247Dof zinc finger protein DOF3.5Add BLAST247

Proteomic databases

PaxDbiQ9SVC5.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G52440.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SVC5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri25 – 79Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410J03D. Eukaryota.
ENOG410YMWI. LUCA.
InParanoidiQ9SVC5.
OMAiHIVEECG.
OrthoDBiEOG09360G19.
PhylomeDBiQ9SVC5.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SVC5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERAEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY
60 70 80 90 100
FCKGCRRYWT KGGSLRNVPV GGGCRKSRRP KSSSGNNTKT SLTANSGNPG
110 120 130 140 150
GGSPSIDLAL VYANFLNPKP DESILQENCD LATTDFLVDN PTGTSMDPSW
160 170 180 190 200
SMDINDGHHD HYINPVEHIV EECGYNGLPP FPGEELLSLD TNGVWSDALL
210 220 230 240
IGHNHVDVGV TPVQAVHEPV VHFADESNDS TNLLFGSWSP FDFTADG
Length:247
Mass (Da):26,936
Last modified:May 1, 2000 - v1
Checksum:iF4BE07549809B116
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL050300 Genomic DNA. Translation: CAB43436.1.
CP002686 Genomic DNA. Translation: AEE78946.1.
PIRiT08455.
RefSeqiNP_190812.1. NM_115104.2.
UniGeneiAt.53903.

Genome annotation databases

EnsemblPlantsiAT3G52440.1; AT3G52440.1; AT3G52440.
GeneIDi824409.
GrameneiAT3G52440.1; AT3G52440.1; AT3G52440.
KEGGiath:AT3G52440.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL050300 Genomic DNA. Translation: CAB43436.1.
CP002686 Genomic DNA. Translation: AEE78946.1.
PIRiT08455.
RefSeqiNP_190812.1. NM_115104.2.
UniGeneiAt.53903.

3D structure databases

ProteinModelPortaliQ9SVC5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G52440.1.

Proteomic databases

PaxDbiQ9SVC5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G52440.1; AT3G52440.1; AT3G52440.
GeneIDi824409.
GrameneiAT3G52440.1; AT3G52440.1; AT3G52440.
KEGGiath:AT3G52440.

Organism-specific databases

TAIRiAT3G52440.

Phylogenomic databases

eggNOGiENOG410J03D. Eukaryota.
ENOG410YMWI. LUCA.
InParanoidiQ9SVC5.
OMAiHIVEECG.
OrthoDBiEOG09360G19.
PhylomeDBiQ9SVC5.

Miscellaneous databases

PROiQ9SVC5.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDOF35_ARATH
AccessioniPrimary (citable) accession number: Q9SVC5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.