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Protein

Pentatricopeptide repeat-containing protein At4g08210

Gene

PCMP-E100

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g08210
Gene namesi
Name:PCMP-E100
Ordered Locus Names:At4g08210
ORF Names:T12G13.50
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G08210
TAIRilocus:2132452 AT4G08210

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003634231 – 686Pentatricopeptide repeat-containing protein At4g08210Add BLAST686

Proteomic databases

PaxDbiQ9SUF9
PRIDEiQ9SUF9

Expressioni

Gene expression databases

ExpressionAtlasiQ9SUF9 baseline and differential
GenevisibleiQ9SUF9 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G08210.1

Structurei

3D structure databases

ProteinModelPortaliQ9SUF9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati4 – 38PPR 1Add BLAST35
Repeati39 – 69PPR 2Add BLAST31
Repeati70 – 104PPR 3Add BLAST35
Repeati106 – 140PPR 4Add BLAST35
Repeati141 – 171PPR 5Add BLAST31
Repeati172 – 206PPR 6Add BLAST35
Repeati207 – 236PPR 7Add BLAST30
Repeati237 – 271PPR 8Add BLAST35
Repeati272 – 302PPR 9Add BLAST31
Repeati306 – 340PPR 10Add BLAST35
Repeati341 – 375PPR 11Add BLAST35
Repeati376 – 406PPR 12Add BLAST31
Repeati407 – 441PPR 13Add BLAST35
Repeati442 – 476PPR 14Add BLAST35
Repeati477 – 507PPR 15Add BLAST31
Repeati508 – 542PPR 16Add BLAST35
Repeati543 – 573PPR 17Add BLAST31
Repeati579 – 609PPR 18Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni614 – 686Type E motif; degenerateAdd BLAST73

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9SUF9
OMAiLHANVGN
OrthoDBiEOG0936068E
PhylomeDBiQ9SUF9

Family and domain databases

Gene3Di1.25.40.10, 7 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 4 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 2 hits
SUPFAMiSSF48452 SSF48452, 4 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Q9SUF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVMDLKLIAA GLRHCGKVQA FKRGESIQAH VIKQGISQNV FIANNVISMY
60 70 80 90 100
VDFRLLSDAH KVFDEMSERN IVTWTTMVSG YTSDGKPNKA IELYRRMLDS
110 120 130 140 150
EEEAANEFMY SAVLKACGLV GDIQLGILVY ERIGKENLRG DVVLMNSVVD
160 170 180 190 200
MYVKNGRLIE ANSSFKEILR PSSTSWNTLI SGYCKAGLMD EAVTLFHRMP
210 220 230 240 250
QPNVVSWNCL ISGFVDKGSP RALEFLVRMQ REGLVLDGFA LPCGLKACSF
260 270 280 290 300
GGLLTMGKQL HCCVVKSGLE SSPFAISALI DMYSNCGSLI YAADVFHQEK
310 320 330 340 350
LAVNSSVAVW NSMLSGFLIN EENEAALWLL LQIYQSDLCF DSYTLSGALK
360 370 380 390 400
ICINYVNLRL GLQVHSLVVV SGYELDYIVG SILVDLHANV GNIQDAHKLF
410 420 430 440 450
HRLPNKDIIA FSGLIRGCVK SGFNSLAFYL FRELIKLGLD ADQFIVSNIL
460 470 480 490 500
KVCSSLASLG WGKQIHGLCI KKGYESEPVT ATALVDMYVK CGEIDNGVVL
510 520 530 540 550
FDGMLERDVV SWTGIIVGFG QNGRVEEAFR YFHKMINIGI EPNKVTFLGL
560 570 580 590 600
LSACRHSGLL EEARSTLETM KSEYGLEPYL EHYYCVVDLL GQAGLFQEAN
610 620 630 640 650
ELINKMPLEP DKTIWTSLLT ACGTHKNAGL VTVIAEKLLK GFPDDPSVYT
660 670 680
SLSNAYATLG MWDQLSKVRE AAKKLGAKES GMSWII
Length:686
Mass (Da):75,825
Last modified:May 1, 2000 - v1
Checksum:i9FD26DBAFCF44EAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL080252 Genomic DNA Translation: CAB45791.1
AL161510 Genomic DNA Translation: CAB81157.1
CP002687 Genomic DNA Translation: AEE82609.1
PIRiT10548
RefSeqiNP_192561.1, NM_116890.2
UniGeneiAt.65338

Genome annotation databases

EnsemblPlantsiAT4G08210.1; AT4G08210.1; AT4G08210
GeneIDi826371
GrameneiAT4G08210.1; AT4G08210.1; AT4G08210
KEGGiath:AT4G08210

Similar proteinsi

Entry informationi

Entry nameiPP305_ARATH
AccessioniPrimary (citable) accession number: Q9SUF9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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