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Protein

Pentatricopeptide repeat-containing protein At4g08210

Gene

PCMP-E100

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g08210
Gene namesi
Name:PCMP-E100
Ordered Locus Names:At4g08210
ORF Names:T12G13.50
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G08210.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 686686Pentatricopeptide repeat-containing protein At4g08210PRO_0000363423Add
BLAST

Proteomic databases

PaxDbiQ9SUF9.
PRIDEiQ9SUF9.

Expressioni

Gene expression databases

GenevisibleiQ9SUF9. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G08210.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SUF9.
SMRiQ9SUF9. Positions 3-680.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati4 – 3835PPR 1Add
BLAST
Repeati39 – 6931PPR 2Add
BLAST
Repeati70 – 10435PPR 3Add
BLAST
Repeati106 – 14035PPR 4Add
BLAST
Repeati141 – 17131PPR 5Add
BLAST
Repeati172 – 20635PPR 6Add
BLAST
Repeati207 – 23630PPR 7Add
BLAST
Repeati237 – 27135PPR 8Add
BLAST
Repeati272 – 30231PPR 9Add
BLAST
Repeati306 – 34035PPR 10Add
BLAST
Repeati341 – 37535PPR 11Add
BLAST
Repeati376 – 40631PPR 12Add
BLAST
Repeati407 – 44135PPR 13Add
BLAST
Repeati442 – 47635PPR 14Add
BLAST
Repeati477 – 50731PPR 15Add
BLAST
Repeati508 – 54235PPR 16Add
BLAST
Repeati543 – 57331PPR 17Add
BLAST
Repeati579 – 60931PPR 18Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni614 – 68673Type E motif; degenerateAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 18 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SUF9.
OMAiACGTHKN.
OrthoDBiEOG0936068E.
PhylomeDBiQ9SUF9.

Family and domain databases

Gene3Di1.25.40.10. 5 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 4 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SUF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVMDLKLIAA GLRHCGKVQA FKRGESIQAH VIKQGISQNV FIANNVISMY
60 70 80 90 100
VDFRLLSDAH KVFDEMSERN IVTWTTMVSG YTSDGKPNKA IELYRRMLDS
110 120 130 140 150
EEEAANEFMY SAVLKACGLV GDIQLGILVY ERIGKENLRG DVVLMNSVVD
160 170 180 190 200
MYVKNGRLIE ANSSFKEILR PSSTSWNTLI SGYCKAGLMD EAVTLFHRMP
210 220 230 240 250
QPNVVSWNCL ISGFVDKGSP RALEFLVRMQ REGLVLDGFA LPCGLKACSF
260 270 280 290 300
GGLLTMGKQL HCCVVKSGLE SSPFAISALI DMYSNCGSLI YAADVFHQEK
310 320 330 340 350
LAVNSSVAVW NSMLSGFLIN EENEAALWLL LQIYQSDLCF DSYTLSGALK
360 370 380 390 400
ICINYVNLRL GLQVHSLVVV SGYELDYIVG SILVDLHANV GNIQDAHKLF
410 420 430 440 450
HRLPNKDIIA FSGLIRGCVK SGFNSLAFYL FRELIKLGLD ADQFIVSNIL
460 470 480 490 500
KVCSSLASLG WGKQIHGLCI KKGYESEPVT ATALVDMYVK CGEIDNGVVL
510 520 530 540 550
FDGMLERDVV SWTGIIVGFG QNGRVEEAFR YFHKMINIGI EPNKVTFLGL
560 570 580 590 600
LSACRHSGLL EEARSTLETM KSEYGLEPYL EHYYCVVDLL GQAGLFQEAN
610 620 630 640 650
ELINKMPLEP DKTIWTSLLT ACGTHKNAGL VTVIAEKLLK GFPDDPSVYT
660 670 680
SLSNAYATLG MWDQLSKVRE AAKKLGAKES GMSWII
Length:686
Mass (Da):75,825
Last modified:May 1, 2000 - v1
Checksum:i9FD26DBAFCF44EAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL080252 Genomic DNA. Translation: CAB45791.1.
AL161510 Genomic DNA. Translation: CAB81157.1.
CP002687 Genomic DNA. Translation: AEE82609.1.
PIRiT10548.
RefSeqiNP_192561.1. NM_116890.1.
UniGeneiAt.65338.

Genome annotation databases

EnsemblPlantsiAT4G08210.1; AT4G08210.1; AT4G08210.
GeneIDi826371.
GrameneiAT4G08210.1; AT4G08210.1; AT4G08210.
KEGGiath:AT4G08210.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL080252 Genomic DNA. Translation: CAB45791.1.
AL161510 Genomic DNA. Translation: CAB81157.1.
CP002687 Genomic DNA. Translation: AEE82609.1.
PIRiT10548.
RefSeqiNP_192561.1. NM_116890.1.
UniGeneiAt.65338.

3D structure databases

ProteinModelPortaliQ9SUF9.
SMRiQ9SUF9. Positions 3-680.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G08210.1.

Proteomic databases

PaxDbiQ9SUF9.
PRIDEiQ9SUF9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G08210.1; AT4G08210.1; AT4G08210.
GeneIDi826371.
GrameneiAT4G08210.1; AT4G08210.1; AT4G08210.
KEGGiath:AT4G08210.

Organism-specific databases

TAIRiAT4G08210.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SUF9.
OMAiACGTHKN.
OrthoDBiEOG0936068E.
PhylomeDBiQ9SUF9.

Miscellaneous databases

PROiQ9SUF9.

Gene expression databases

GenevisibleiQ9SUF9. AT.

Family and domain databases

Gene3Di1.25.40.10. 5 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 4 hits.
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP305_ARATH
AccessioniPrimary (citable) accession number: Q9SUF9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.