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Protein

Ethylene-responsive transcription factor CRF4

Gene

CRF4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi117 – 174AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  • cytokinin-activated signaling pathway Source: UniProtKB-KW
  • ethylene-activated signaling pathway Source: UniProtKB-KW
  • leaf development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionActivator, DNA-binding
Biological processCytokinin signaling pathway, Ethylene signaling pathway, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor CRF4
Alternative name(s):
Protein CYTOKININ RESPONSE FACTOR 4
Gene namesi
Name:CRF4
Synonyms:ERF066
Ordered Locus Names:At4g27950
ORF Names:T13J8.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G27950
TAIRilocus:2132962 AT4G27950

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002979191 – 335Ethylene-responsive transcription factor CRF4Add BLAST335

Proteomic databases

PaxDbiQ9SUE3

Expressioni

Gene expression databases

ExpressionAtlasiQ9SUE3 baseline and differential

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi14195, 13 interactors
IntActiQ9SUE3, 17 interactors
STRINGi3702.AT4G27950.1

Structurei

3D structure databases

ProteinModelPortaliQ9SUE3
SMRiQ9SUE3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410JBVY Eukaryota
ENOG410YM3E LUCA
HOGENOMiHOG000237664
InParanoidiQ9SUE3
OMAiPTENDFF
OrthoDBiEOG09360H71

Family and domain databases

CDDicd00018 AP2, 1 hit
Gene3Di3.30.730.10, 1 hit
InterProiView protein in InterPro
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
PfamiView protein in Pfam
PF00847 AP2, 1 hit
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 1 hit
SUPFAMiSSF54171 SSF54171, 1 hit
PROSITEiView protein in PROSITE
PS51032 AP2_ERF, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SUE3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR
60 70 80 90 100
DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
110 120 130 140 150
VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA
160 170 180 190 200
EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
210 220 230 240 250
MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE
260 270 280 290 300
GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
310 320 330
LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Length:335
Mass (Da):38,448
Last modified:May 31, 2011 - v2
Checksum:iCA487909D2D1E318
GO

Sequence cautioni

The sequence CAB36764 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence CAB79597 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035524 Genomic DNA Translation: CAB36764.1 Different initiation.
AL161572 Genomic DNA Translation: CAB79597.1 Different initiation.
CP002687 Genomic DNA Translation: AEE85412.1
BT033088 mRNA Translation: ACF04811.1
AY560872 mRNA Translation: AAT44939.1
PIRiT02896
RefSeqiNP_194524.2, NM_118933.3
UniGeneiAt.49716

Genome annotation databases

EnsemblPlantsiAT4G27950.1; AT4G27950.1; AT4G27950
GeneIDi828908
GrameneiAT4G27950.1; AT4G27950.1; AT4G27950
KEGGiath:AT4G27950

Similar proteinsi

Entry informationi

Entry nameiCRF4_ARATH
AccessioniPrimary (citable) accession number: Q9SUE3
Secondary accession number(s): B3LFA0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: May 31, 2011
Last modified: April 25, 2018
This is version 117 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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