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Q9SU87 (Q9SU87_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Cytidine deaminase PIRNR PIRNR006334
EC=3.5.4.5 PIRNR PIRNR006334
Gene names
Name:T16L4.110 EMBL CAB45320.1
Synonyms:AT4g29600 EMBL CAB79718.1
Ordered Locus Names:At4g29600 TAIR At4g29600
ORF Names:AT4G29600 EMBL AEE85650.1
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length307 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Cytidine + H2O = uridine + NH3. PIRNR PIRNR006334

Cofactor

Binds 1 zinc ion By similarity. PIRNR PIRNR006334 PIRSR PIRSR006334-3

Sequence similarities

Belongs to the cytidine and deoxycytidylate deaminase family. PIRNR PIRNR006334

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region63 – 653Substrate binding By similarity PIRSR PIRSR006334-2

Sites

Active site781Proton donor By similarity PIRSR PIRSR006334-1
Metal binding761Zinc; catalytic By similarity PIRSR PIRSR006334-3
Metal binding1111Zinc; catalytic By similarity PIRSR PIRSR006334-3
Metal binding1141Zinc; catalytic By similarity PIRSR PIRSR006334-3

Sequences

Sequence LengthMass (Da)Tools
Q9SU87 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 9E8BE6F01DA8749D

FASTA30733,726
        10         20         30         40         50         60 
MAAQDKYKFV FTAKEAASEG VTEPIRLPKL IRKAMSLARG PISKYKVGAV GRASSGRVYL 

        70         80         90        100        110        120 
GVNVEFPGLP LHHSIHPEQF LVTNLALNSE KGLRQLAVAI SSDCIEFGAP CGNCRQFLME 

       130        140        150        160        170        180 
TSNELDIKIL LKSKHEAEGS FSSLKLLLPY RFTPDDVLPK GSPLLLEKRD NCLTLSGSTE 

       190        200        210        220        230        240 
EICSSDCSHL KCKALAAANN SFSPYTESPS GVALQDDEGK WYRGWYIESV AYSPSLGPVQ 

       250        260        270        280        290        300 
AALVDFVARS RGKGFNKIVE AVLVEKNNAR VSQERTAKMI LDTIAAPNCD FKVFHCYVDL 


QKKFITE

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References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
EU, CSHL and WU Arabidopsis Sequencing Project
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B. expand/collapse author list , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]EU Arabidopsis sequencing project
Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Bevan M., Rose M., Hempel S., Entian K.-D., Bancroft I., Mewes H.W., Mayer K.F.X., Lemcke K., Schueller C.
Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]Rose M., Hempel S., Entian K.-D., Mewes H.W., Lemcke K., Mayer K.F.X.
Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]EU Arabidopsis sequencing project
Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002687 Genomic DNA. Translation: AEE85650.1.
AL079344 Genomic DNA. Translation: CAB45320.1.
AL161575 Genomic DNA. Translation: CAB79718.1.
IPIIPI00539525.
PIRT09923.
RefSeqNP_194689.1. NM_119105.1.
UniGeneAt.54546.

3D structure databases

HSSPHSSP built from PDB template 1CTT based on UniProtKB P13652.
SMRQ9SU87. Positions 30-284.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT4G29600.1; AT4G29600.1; AT4G29600.
GeneID829081.
KEGGath:AT4G29600.

Phylogenomic databases

OMASKHEAEG.

Gene expression databases

GenevestigatorQ9SU87.

Family and domain databases

InterProIPR002125. CMP_dCMP_Zn-bd.
IPR013171. Cyd/dCyd_deaminase_Zn-bd.
IPR006263. Cyt_deam_dimer.
IPR016193. Cytidine_deaminase-like.
[Graphical view]
PfamPF00383. dCMP_cyt_deam_1. 1 hit.
PF08211. dCMP_cyt_deam_2. 1 hit.
[Graphical view]
PIRSFPIRSF006334. Cdd_plus_pseudo. 1 hit.
SUPFAMSSF53927. Cytidine_deaminase-like. 2 hits.
TIGRFAMsTIGR01355. cyt_deam_dimer. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9SU87_ARATH
AccessionPrimary (citable) accession number: Q9SU87
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 1, 2013
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info