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Protein

SelT-like protein

Gene

At3g47300

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
SelT-like protein
Gene namesi
Ordered Locus Names:At3g47300
ORF Names:T21L8.50
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G47300.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 209187SelT-like proteinPRO_0000032292Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi64 ↔ 67Redox-activeSequence analysis

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiQ9STZ2.
PRIDEiQ9STZ2.

Interactioni

Protein-protein interaction databases

BioGridi9204. 1 interaction.
STRINGi3702.AT3G47300.1.

Structurei

3D structure databases

ProteinModelPortaliQ9STZ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SelWTH family. SELT subfamily.Curated

Keywords - Domaini

Redox-active center, Signal

Phylogenomic databases

eggNOGiKOG3286. Eukaryota.
ENOG4111J49. LUCA.
HOGENOMiHOG000238433.
InParanoidiQ9STZ2.
OMAiMTPPPWY.
PhylomeDBiQ9STZ2.

Family and domain databases

Gene3Di3.40.30.10. 2 hits.
InterProiIPR011893. Selenoprotein_Rdx-typ.
IPR019389. Selenoprotein_T.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PANTHERiPTHR13544. PTHR13544. 1 hit.
PfamiPF10262. Rdx. 1 hit.
[Graphical view]
SUPFAMiSSF52833. SSF52833. 2 hits.
TIGRFAMsiTIGR02174. CXXU_selWTH. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9STZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDKTQLILLG LPIFLLCSDL FNLFTPPPPK SQHQSPPSIS ETLDFPAQKS
60 70 80 90 100
TGVGYGNTVE INFCISCSYK GTAVSMKKML ESVFPGLDVV LANYPAPAPK
110 120 130 140 150
RILAKVVPVA QVGVIGLIMG GEQIFPMIGI AQPPAWYHSL RANRFGSMAS
160 170 180 190 200
TWLLGNFLQS FLQSSGAFEV SCNGELVFSK LKEGRFPGEI ELRDLISGTM

TKPFVTGSY
Length:209
Mass (Da):22,651
Last modified:December 20, 2005 - v2
Checksum:iA39AE6D4F1536DBB
GO

Sequence cautioni

The sequence CAB51202.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti196 – 1961I → S in BAD43801 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL096860 Genomic DNA. Translation: CAB51202.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE78263.1.
BT010507 mRNA. Translation: AAQ65130.1.
AK175455 mRNA. Translation: BAD43218.1.
AK176038 mRNA. Translation: BAD43801.1.
AK176362 mRNA. Translation: BAD44125.1.
PIRiT12985.
RefSeqiNP_190314.2. NM_114598.3.
UniGeneiAt.35821.
At.35823.

Genome annotation databases

EnsemblPlantsiAT3G47300.1; AT3G47300.1; AT3G47300.
GeneIDi823884.
GrameneiAT3G47300.1; AT3G47300.1; AT3G47300.
KEGGiath:AT3G47300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL096860 Genomic DNA. Translation: CAB51202.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE78263.1.
BT010507 mRNA. Translation: AAQ65130.1.
AK175455 mRNA. Translation: BAD43218.1.
AK176038 mRNA. Translation: BAD43801.1.
AK176362 mRNA. Translation: BAD44125.1.
PIRiT12985.
RefSeqiNP_190314.2. NM_114598.3.
UniGeneiAt.35821.
At.35823.

3D structure databases

ProteinModelPortaliQ9STZ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9204. 1 interaction.
STRINGi3702.AT3G47300.1.

Proteomic databases

PaxDbiQ9STZ2.
PRIDEiQ9STZ2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G47300.1; AT3G47300.1; AT3G47300.
GeneIDi823884.
GrameneiAT3G47300.1; AT3G47300.1; AT3G47300.
KEGGiath:AT3G47300.

Organism-specific databases

TAIRiAT3G47300.

Phylogenomic databases

eggNOGiKOG3286. Eukaryota.
ENOG4111J49. LUCA.
HOGENOMiHOG000238433.
InParanoidiQ9STZ2.
OMAiMTPPPWY.
PhylomeDBiQ9STZ2.

Miscellaneous databases

PROiQ9STZ2.

Family and domain databases

Gene3Di3.40.30.10. 2 hits.
InterProiIPR011893. Selenoprotein_Rdx-typ.
IPR019389. Selenoprotein_T.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PANTHERiPTHR13544. PTHR13544. 1 hit.
PfamiPF10262. Rdx. 1 hit.
[Graphical view]
SUPFAMiSSF52833. SSF52833. 2 hits.
TIGRFAMsiTIGR02174. CXXU_selWTH. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiSELT_ARATH
AccessioniPrimary (citable) accession number: Q9STZ2
Secondary accession number(s): Q67ZS9, Q6NQE9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 2, 2001
Last sequence update: December 20, 2005
Last modified: February 17, 2016
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.