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Protein
Submitted name:

LG27/30-like gene

Gene

T22A6.260

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Names & Taxonomyi

Protein namesi
Submitted name:
LG27/30-like geneImported
Submitted name:
Rhamnogalacturonate lyase family proteinImported
Gene namesi
Name:T22A6.260Imported
Ordered Locus Names:At4g24430Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G24430.

Subcellular locationi

GO - Cellular componenti

  • vacuolar membrane Source: TAIR
Complete GO annotation...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini359 – 43173fn3_3InterPro annotationAdd
BLAST
Domaini445 – 636192CBM-likeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410JS5Q. Eukaryota.
ENOG410YE12. LUCA.
HOGENOMiHOG000243636.
KOiK18195.
OMAiPISLAMF.
OrthoDBiEOG093604NY.
PhylomeDBiQ9STV1.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9STV1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNQDSVQLD VQESHVVMGN GKVKVTISKP DGFVTGISYQ GVDNLLETHN
60 70 80 90 100
EDFNRGYWDL VWSDEGTPGT TGKSERIKGT SFEVVVENEE LVEISFSRKW
110 120 130 140 150
DSSLQDSIAP INVDKRFIMR KDVTGFYSYA IFEHLAEWPA FNLPQTRIVY
160 170 180 190 200
KLRKDKFKYM AIADNRQRKM PLPEDRLGKR GRPLAYPEAV LLVHPVEDEF
210 220 230 240 250
KGEVDDKYEY SSENKDLKVH GWISHNLDLG CWQIIPSNEF RSGGLSKQNL
260 270 280 290 300
TSHVGPISLA MFLSAHYAGE DMVMKVKAGD SWKKVFGPVF TYLNCLPDKT
310 320 330 340 350
SDPLSLWQDA KNQMLTEVQS WPYDFPASED FPVSDKRGCI SGRLLVCDKF
360 370 380 390 400
LSDDFLPANG AFVGLAPPGE VGSWQLESKG YQFWTEADSD GYFAINDIRE
410 420 430 440 450
GEYNLNGYVT GWIGDYQYEQ LINITAGCDI DVGNIVYEPP RDGPTVWEIG
460 470 480 490 500
IPDRSAAEFF VPDPNPKYIN KLYIGHPDRF RQYGLWERYT ELYPKEDLVF
510 520 530 540 550
TIGVSDYKKD WFFAHVTRKM GDDTYQKTTW QIKFKLENVQ KSCTYKIRIA
560 570 580 590 600
LATANVAELQ VRMNDDDTEK TTPIFTTGVI GHDNAIARHG IHGIYRLYNV
610 620 630 640
DVPSEKLVEG DNTLFLTQTM TTTGAFNGLM YDYIRLEGPP LDSYSH
Length:646
Mass (Da):73,609
Last modified:May 1, 2000 - v1
Checksum:iB5ACAD2021EAE0C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE84903.1.
AL078637 Genomic DNA. Translation: CAB45078.1.
AL161561 Genomic DNA. Translation: CAB79353.1.
PIRiT09906.
RefSeqiNP_567703.4. NM_118576.5.
UniGeneiAt.26232.

Genome annotation databases

EnsemblPlantsiAT4G24430.1; AT4G24430.1; AT4G24430.
GeneIDi828545.
GrameneiAT4G24430.1; AT4G24430.1; AT4G24430.
KEGGiath:AT4G24430.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE84903.1.
AL078637 Genomic DNA. Translation: CAB45078.1.
AL161561 Genomic DNA. Translation: CAB79353.1.
PIRiT09906.
RefSeqiNP_567703.4. NM_118576.5.
UniGeneiAt.26232.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G24430.1; AT4G24430.1; AT4G24430.
GeneIDi828545.
GrameneiAT4G24430.1; AT4G24430.1; AT4G24430.
KEGGiath:AT4G24430.

Organism-specific databases

TAIRiAT4G24430.

Phylogenomic databases

eggNOGiENOG410JS5Q. Eukaryota.
ENOG410YE12. LUCA.
HOGENOMiHOG000243636.
KOiK18195.
OMAiPISLAMF.
OrthoDBiEOG093604NY.
PhylomeDBiQ9STV1.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9STV1_ARATH
AccessioniPrimary (citable) accession number: Q9STV1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.