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Q9STS7 (Q9STS7_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 93. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative uncharacterized protein At3g47860 EMBL AAK59669.1

Putative uncharacterized protein T23J7.190 EMBL CAB41869.1
Gene names
Name:T23J7.190 EMBL CAB41869.1
Synonyms:CHL EMBL AEE78341.1
Ordered Locus Names:At3g47860 EMBL AEE78341.1 TAIR AT3G47860
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length353 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9STS7 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 14A83B0CF1BA8D0D

FASTA35339,116
        10         20         30         40         50         60 
MILLSSSISL SRPVSSQSFS PPAATSTRRS HSSVTVKCCC SSRRLLKNPE LKCSLENLFE 

        70         80         90        100        110        120 
IQALRKCFVS GFAAILLLSQ AGQGIALDLS SGYQNICQLG SAAAVGENKL TLPSDGDSES 

       130        140        150        160        170        180 
MMMMMMRGMT AKNFDPVRYS GRWFEVASLK RGFAGQGQED CHCTQGVYTF DMKESAIRVD 

       190        200        210        220        230        240 
TFCVHGSPDG YITGIRGKVQ CVGAEDLEKS ETDLEKQEMI KEKCFLRFPT IPFIPKLPYD 

       250        260        270        280        290        300 
VIATDYDNYA LVSGAKDKGF VQVYSRTPNP GPEFIAKYKN YLAQFGYDPE KIKDTPQDCE 

       310        320        330        340        350 
VTDAELAAMM SMPGMEQTLT NQFPDLGLRK SVQFDPFTSV FETLKKLVPL YFK 

« Hide

References

« Hide 'large scale' references
[1]Choisne N., Robert C., Brottier P., Wincker P., Cattolico L., Artiguenave F., Saurin W., Weissenbach J., Mewes H.W., Mayer K.F.X., Lemcke K., Schueller C., Quetier F., Salanoubat M.
Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]EU Arabidopsis sequencing project
Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]"Arabidopsis Full Length cDNA Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T. expand/collapse author list , Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (MAY-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]Lam B., Southwick A., Karlin-Neumann G., Nguyen M., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Chen H., Cheuk R., Chung M.K., Kim C., Lin J., Liu S.X., Pham P.K., Sakano H., Shinn P. expand/collapse author list , Yamada K., Ecker J., Theologis A., Davis R.W.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y. expand/collapse author list , Ishida J., Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY035165 mRNA. Translation: AAK59669.1.
AY044334 mRNA. Translation: AAK73275.1.
BT003002 mRNA. Translation: AAO22810.1.
CP002686 Genomic DNA. Translation: AEE78341.1.
AL049746 Genomic DNA. Translation: CAB41869.1.
PIRT07725.
RefSeqNP_190370.1. NM_114656.3.
UniGeneAt.3254.

3D structure databases

ProteinModelPortalQ9STS7.
SMRQ9STS7. Positions 132-297.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3702.AT3G47860.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G47860.1; AT3G47860.1; AT3G47860.
GeneID823942.
KEGGath:AT3G47860.

Organism-specific databases

TAIRAT3G47860.

Phylogenomic databases

eggNOGNOG280002.
HOGENOMHOG000029210.
InParanoidQ9STS7.
OMACFLRFPT.
PhylomeDBQ9STS7.

Enzyme and pathway databases

BioCycARA:GQT-266-MONOMER.

Gene expression databases

GenevestigatorQ9STS7.

Family and domain databases

Gene3D2.40.128.20. 1 hit.
InterProIPR012674. Calycin.
IPR011038. Calycin-like.
IPR022272. Lipocalin_CS.
IPR000566. Lipocln_cytosolic_FA-bd_dom.
[Graphical view]
PfamPF08212. Lipocalin_2. 1 hit.
[Graphical view]
SUPFAMSSF50814. SSF50814. 1 hit.
PROSITEPS00213. LIPOCALIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

PROQ9STS7.

Entry information

Entry nameQ9STS7_ARATH
AccessionPrimary (citable) accession number: Q9STS7
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)