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Protein
Submitted name:

Chloroplastic lipocalin

Gene

T23J7.190

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • response to oxidative stress Source: TAIR
Complete GO annotation...

Enzyme and pathway databases

BioCyciARA:GQT-266-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Chloroplastic lipocalinImported
Submitted name:
Putative uncharacterized protein At3g47860Imported
Submitted name:
Putative uncharacterized protein T23J7.190Imported
Gene namesi
Name:T23J7.190Imported
Synonyms:CHLImported
Ordered Locus Names:At3g47860Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G47860.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
  • thylakoid lumen Source: TAIR
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ9STS7.
PRIDEiQ9STS7.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G47860.1.

Structurei

3D structure databases

ProteinModelPortaliQ9STS7.
SMRiQ9STS7. Positions 132-297.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG280002.
HOGENOMiHOG000029210.
InParanoidiQ9STS7.
OMAiAIQVDTF.
PhylomeDBiQ9STS7.

Family and domain databases

Gene3Di2.40.128.20. 1 hit.
InterProiIPR012674. Calycin.
IPR011038. Calycin-like.
IPR022272. Lipocalin_CS.
IPR000566. Lipocln_cytosolic_FA-bd_dom.
[Graphical view]
PfamiPF08212. Lipocalin_2. 1 hit.
[Graphical view]
SUPFAMiSSF50814. SSF50814. 1 hit.
PROSITEiPS00213. LIPOCALIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9STS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILLSSSISL SRPVSSQSFS PPAATSTRRS HSSVTVKCCC SSRRLLKNPE
60 70 80 90 100
LKCSLENLFE IQALRKCFVS GFAAILLLSQ AGQGIALDLS SGYQNICQLG
110 120 130 140 150
SAAAVGENKL TLPSDGDSES MMMMMMRGMT AKNFDPVRYS GRWFEVASLK
160 170 180 190 200
RGFAGQGQED CHCTQGVYTF DMKESAIRVD TFCVHGSPDG YITGIRGKVQ
210 220 230 240 250
CVGAEDLEKS ETDLEKQEMI KEKCFLRFPT IPFIPKLPYD VIATDYDNYA
260 270 280 290 300
LVSGAKDKGF VQVYSRTPNP GPEFIAKYKN YLAQFGYDPE KIKDTPQDCE
310 320 330 340 350
VTDAELAAMM SMPGMEQTLT NQFPDLGLRK SVQFDPFTSV FETLKKLVPL

YFK
Length:353
Mass (Da):39,116
Last modified:May 1, 2000 - v1
Checksum:i14A83B0CF1BA8D0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY035165 mRNA. Translation: AAK59669.1.
AY044334 mRNA. Translation: AAK73275.1.
BT003002 mRNA. Translation: AAO22810.1.
CP002686 Genomic DNA. Translation: AEE78341.1.
AL049746 Genomic DNA. Translation: CAB41869.1.
PIRiT07725.
RefSeqiNP_190370.1. NM_114656.3.
UniGeneiAt.3254.

Genome annotation databases

EnsemblPlantsiAT3G47860.1; AT3G47860.1; AT3G47860.
GeneIDi823942.
KEGGiath:AT3G47860.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY035165 mRNA. Translation: AAK59669.1.
AY044334 mRNA. Translation: AAK73275.1.
BT003002 mRNA. Translation: AAO22810.1.
CP002686 Genomic DNA. Translation: AEE78341.1.
AL049746 Genomic DNA. Translation: CAB41869.1.
PIRiT07725.
RefSeqiNP_190370.1. NM_114656.3.
UniGeneiAt.3254.

3D structure databases

ProteinModelPortaliQ9STS7.
SMRiQ9STS7. Positions 132-297.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G47860.1.

Proteomic databases

PaxDbiQ9STS7.
PRIDEiQ9STS7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G47860.1; AT3G47860.1; AT3G47860.
GeneIDi823942.
KEGGiath:AT3G47860.

Organism-specific databases

TAIRiAT3G47860.

Phylogenomic databases

eggNOGiNOG280002.
HOGENOMiHOG000029210.
InParanoidiQ9STS7.
OMAiAIQVDTF.
PhylomeDBiQ9STS7.

Enzyme and pathway databases

BioCyciARA:GQT-266-MONOMER.

Miscellaneous databases

PROiQ9STS7.

Family and domain databases

Gene3Di2.40.128.20. 1 hit.
InterProiIPR012674. Calycin.
IPR011038. Calycin-like.
IPR022272. Lipocalin_CS.
IPR000566. Lipocln_cytosolic_FA-bd_dom.
[Graphical view]
PfamiPF08212. Lipocalin_2. 1 hit.
[Graphical view]
SUPFAMiSSF50814. SSF50814. 1 hit.
PROSITEiPS00213. LIPOCALIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. EU Arabidopsis sequencing project
    Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9STS7_ARATH
AccessioniPrimary (citable) accession number: Q9STS7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 22, 2015
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.