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Q9STS7

- Q9STS7_ARATH

UniProt

Q9STS7 - Q9STS7_ARATH

Protein
Submitted name:

Chloroplastic lipocalin

Gene

T23J7.190

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 95 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. response to oxidative stress Source: TAIR

    Enzyme and pathway databases

    BioCyciARA:GQT-266-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Chloroplastic lipocalinImported
    Submitted name:
    Putative uncharacterized protein At3g47860Imported
    Submitted name:
    Putative uncharacterized protein T23J7.190Imported
    Gene namesi
    Name:T23J7.190Imported
    Synonyms:CHLImported
    Ordered Locus Names:At3g47860Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G47860.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: TAIR
    2. chloroplast thylakoid membrane Source: TAIR
    3. thylakoid lumen Source: TAIR

    Expressioni

    Gene expression databases

    GenevestigatoriQ9STS7.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G47860.1-P.

    Structurei

    3D structure databases

    SMRiQ9STS7. Positions 132-297.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG280002.
    HOGENOMiHOG000029210.
    InParanoidiQ9STS7.
    OMAiCFLRFPT.
    PhylomeDBiQ9STS7.

    Family and domain databases

    Gene3Di2.40.128.20. 1 hit.
    InterProiIPR012674. Calycin.
    IPR011038. Calycin-like.
    IPR022272. Lipocalin_CS.
    IPR000566. Lipocln_cytosolic_FA-bd_dom.
    [Graphical view]
    PfamiPF08212. Lipocalin_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50814. SSF50814. 1 hit.
    PROSITEiPS00213. LIPOCALIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9STS7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MILLSSSISL SRPVSSQSFS PPAATSTRRS HSSVTVKCCC SSRRLLKNPE    50
    LKCSLENLFE IQALRKCFVS GFAAILLLSQ AGQGIALDLS SGYQNICQLG 100
    SAAAVGENKL TLPSDGDSES MMMMMMRGMT AKNFDPVRYS GRWFEVASLK 150
    RGFAGQGQED CHCTQGVYTF DMKESAIRVD TFCVHGSPDG YITGIRGKVQ 200
    CVGAEDLEKS ETDLEKQEMI KEKCFLRFPT IPFIPKLPYD VIATDYDNYA 250
    LVSGAKDKGF VQVYSRTPNP GPEFIAKYKN YLAQFGYDPE KIKDTPQDCE 300
    VTDAELAAMM SMPGMEQTLT NQFPDLGLRK SVQFDPFTSV FETLKKLVPL 350
    YFK 353
    Length:353
    Mass (Da):39,116
    Last modified:May 1, 2000 - v1
    Checksum:i14A83B0CF1BA8D0D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY035165 mRNA. Translation: AAK59669.1.
    AY044334 mRNA. Translation: AAK73275.1.
    BT003002 mRNA. Translation: AAO22810.1.
    CP002686 Genomic DNA. Translation: AEE78341.1.
    AL049746 Genomic DNA. Translation: CAB41869.1.
    PIRiT07725.
    RefSeqiNP_190370.1. NM_114656.3.
    UniGeneiAt.3254.

    Genome annotation databases

    EnsemblPlantsiAT3G47860.1; AT3G47860.1; AT3G47860.
    GeneIDi823942.
    KEGGiath:AT3G47860.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY035165 mRNA. Translation: AAK59669.1 .
    AY044334 mRNA. Translation: AAK73275.1 .
    BT003002 mRNA. Translation: AAO22810.1 .
    CP002686 Genomic DNA. Translation: AEE78341.1 .
    AL049746 Genomic DNA. Translation: CAB41869.1 .
    PIRi T07725.
    RefSeqi NP_190370.1. NM_114656.3.
    UniGenei At.3254.

    3D structure databases

    SMRi Q9STS7. Positions 132-297.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G47860.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G47860.1 ; AT3G47860.1 ; AT3G47860 .
    GeneIDi 823942.
    KEGGi ath:AT3G47860.

    Organism-specific databases

    TAIRi AT3G47860.

    Phylogenomic databases

    eggNOGi NOG280002.
    HOGENOMi HOG000029210.
    InParanoidi Q9STS7.
    OMAi CFLRFPT.
    PhylomeDBi Q9STS7.

    Enzyme and pathway databases

    BioCyci ARA:GQT-266-MONOMER.

    Miscellaneous databases

    PROi Q9STS7.

    Gene expression databases

    Genevestigatori Q9STS7.

    Family and domain databases

    Gene3Di 2.40.128.20. 1 hit.
    InterProi IPR012674. Calycin.
    IPR011038. Calycin-like.
    IPR022272. Lipocalin_CS.
    IPR000566. Lipocln_cytosolic_FA-bd_dom.
    [Graphical view ]
    Pfami PF08212. Lipocalin_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50814. SSF50814. 1 hit.
    PROSITEi PS00213. LIPOCALIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
    2. EU Arabidopsis sequencing project
      Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
    5. Cited for: NUCLEOTIDE SEQUENCE.
    6. Cited for: NUCLEOTIDE SEQUENCE.
    7. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ9STS7_ARATH
    AccessioniPrimary (citable) accession number: Q9STS7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 95 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3