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Q9STC1 (Q9STC1_9FLOR) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.2.2.13 EMBL CAB51910.1
Gene names
Name:Ag111 EMBL CAB51910.1
OrganismGracilariopsis lemaneiformis EMBL CAB51910.1
Taxonomic identifier2782 [NCBI]
Taxonomic lineageEukaryotaRhodophytaFlorideophyceaeGracilarialesGracilariaceaeGracilariopsis

Protein attributes

Sequence length1088 AA.
Sequence statusFragment.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide‹1 – 50›50 Potential EMBL CAB51910.1
Chain51 – 10881038 Potential EMBL CAB51910.1
PRO_5000147347

Sites

Binding site2951Acetate 1 PDB 2X2H
Binding site5261Acetate 2 PDB 2X2H
Binding site6051Chloride PDB 2X2H PDB 2X2J
Binding site6991Chloride PDB 2X2H PDB 2X2J
Binding site8951Acetate 3 PDB 2X2H
Binding site9221Acetate 3; via amide nitrogen PDB 2X2H
Binding site10361Acetate 4; via carbonyl oxygen PDB 2X2H

Experimental info

Non-terminal residue11 EMBL CAB51910.1

Sequences

Sequence LengthMass (Da)Tools
Q9STC1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: AFA40991350ABEFA

FASTA1,088122,338
        10         20         30         40         50         60 
MFSTLAFVAP SALGASTFVG AEVRSNVRIH SAFPAVHTAT RKTNRLNVSM TALSDKQTAT 

        70         80         90        100        110        120 
AGSTDNPDGI DYKTYDYVGV WGFSPLSNTN WFAAGSSTPG GITDWTATMN VNFDRIDNPS 

       130        140        150        160        170        180 
ITVQHPVQVQ VTSYNNNSYR VRFNPDGPIR DVTRGPILKQ QLDWIRTQEL SEGCDPGMTF 

       190        200        210        220        230        240 
TSEGFLTFET KDLSVIIYGN FKTRVTRKSD GKVIMENDEV GTASSGNKCR GLMFVDRLYG 

       250        260        270        280        290        300 
NAIASVNKNF RNDAVKQEGF YGAGEVNCKY QDTYILERTG IAMTNYNYDN LNYNQWDLRP 

       310        320        330        340        350        360 
PHHDGALNPD YYIPMYYAAP WLIVNGCAGT SEQYSYGWFM DNVSQSYMNT GDTTWNSGQE 

       370        380        390        400        410        420 
DLAYMGAQYG PFDQHFVYGA GGGMECVVTA FSLLQGKEFE NQVLNKRSVM PPKYVFGFFQ 

       430        440        450        460        470        480 
GVFGTSSLLR AHMPAGENNI SVEEIVEGYQ NNNFPFEGLA VDVDMQDNLR VFTTKGEFWT 

       490        500        510        520        530        540 
ANRVGTGGDP NNRSVFEWAH DKGLVCQTNI TCFLRNDNEG QDYEVNQTLR ERQLYTKNDS 

       550        560        570        580        590        600 
LTGTDFGMTD DGPSDAYIGH LDYGGGVECD ALFPDWGRPD VAEWWGNNYK KLFSIGLDFV 

       610        620        630        640        650        660 
WQDMTVPAMM PHKIGDDINV KPDGNWPNAD DPSNGQYNWK TYHPQVLVTD MRYENHGREP 

       670        680        690        700        710        720 
MVTQRNIHAY TLCESTRKEG IVENADTLTK FRRSYIISRG GYIGNQHFGG MWVGDNSTTS 

       730        740        750        760        770        780 
NYIQMMIANN INMNMSCLPL VGSDIGGFTS YDNENQRTPC TGDLMVRYVQ AGCLLPWFRN 

       790        800        810        820        830        840 
HYDRWIESKD HGKDYQELYM YPNEMDTLRK FVEFRYRWQE VLYTAMYQNA AFGKPIIKAA 

       850        860        870        880        890        900 
SMYNNDSNVR RAQNDHFLLG GHDGYRILCA PVVWENSTER ELYLPVLTQW YKFGPDFDTK 

       910        920        930        940        950        960 
PLEGAMNGGD RIYNYPVPQS ESPIFVREGA ILPTRYTLNG ENKSLNTYTD EDPLVFEVFP 

       970        980        990       1000       1010       1020 
LGNNRADGMC YLDDGGVTTN AEDNGKFSVV KVAAEQDGGT ETITFTNDCY EYVFGGPFYV 

      1030       1040       1050       1060       1070       1080 
RVRGAQSPSN IHVSSGAGSQ DMKVSSATSR AALFNDGENG DFWVDQETDS LWLKLPNVVL 


PDAVITIT 

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References

[1]"A group of alpha-1,4-glucan lyases and their genes from the red alga Gracilariopsis lemaneiformis: purification, cloning, and heterologous expression."
Bojsen K., Yu S., Kragh K.M., Marcussen J.
Biochim. Biophys. Acta 1430:396-402(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Crystal structure of ?-1,4-glucan lyase, a unique glycoside hydrolase family member with a novel catalytic mechanism."
Rozeboom H.J., Yu S., Madrid S., Kalk K.H., Zhang R., Dijkstra B.W.
J. Biol. Chem. 288:26764-26774(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 62-1088 IN COMPLEX WITH ACETATE AND CHLORIDE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Y18737 Genomic DNA. Translation: CAB51910.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2X2HX-ray2.06A/B/C/D62-1088[»]
2X2IX-ray2.60A/B/C/D62-1088[»]
2X2JX-ray2.35A/B/C/D62-1088[»]
4AMWX-ray1.90A/B/C/D62-1088[»]
4AMXX-ray2.10A/B/C/D62-1088[»]
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH31. Glycoside Hydrolase Family 31.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR011013. Gal_mutarotase_SF_dom.
IPR000322. Glyco_hydro_31.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF01055. Glyco_hydro_31. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
SSF74650. SSF74650. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ9STC1.

Entry information

Entry nameQ9STC1_9FLOR
AccessionPrimary (citable) accession number: Q9STC1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 22, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)