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Q9SSV1 (Q9SSV1_NICGU) Unreviewed, UniProtKB/TrEMBL

Last modified October 19, 2011. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
RNase NGR3 EMBL BAA84469.1
Submitted name:
Ribonuclease NGR3 EMBL BAC77611.1
Gene names
Name:NGR3 EMBL BAA84469.1
Synonyms:ngr3 EMBL BAC77611.1
OrganismNicotiana glutinosa (Tobacco) EMBL BAA84469.1
Taxonomic identifier35889 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Nicotianoideae › Nicotianeae › Nicotiana

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the RNase T2 family. RuleBase RU004328

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding65 – 673AMP PDB 1VD1
Nucleotide binding112 – 1209AMP PDB 1VD1

Sites

Binding site351AMP PDB 1VD1
Binding site401AMP PDB 1VD1
Binding site731AMP PDB 1VD1
Binding site1021AMP; via amide nitrogen PDB 1VD1
Binding site1931AMP PDB 1VD1

Sequences

Sequence LengthMass (Da)Tools
Q9SSV1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: C3953D2B142BE202

FASTA23627,048
        10         20         30         40         50         60 
MMKPQKSLLV KIFVVQCLLV LCVAQDFDFF YFVQQWPASY CDTRRSCCYP TTGKPDEDFS 

        70         80         90        100        110        120 
IHGLWPNYEN GKWPQNCDRE SSLDESEISD LISTMEKNWP SLACPSSDGV RFWSHEWLKH 

       130        140        150        160        170        180 
GTCSALGERA YFQAALDFRK KSNLLENLKN AEITPRNGEH YTLESIKKAI EEGVGHSPYI 

       190        200        210        220        230 
ECNVDTQGNH QIYQVYLCVD KTATDFIDCP IFPHGRGCGS KIEFPPFSSE SDHDEF

« Hide

References

[1]"Genomic cloning of ribonucleases in Nicotiana glutinosa leaves, as induced in response to wounding or to TMV-infection, and characterization of their promoters."
Hayashi T., Kobayashi D., Kariu T., Tahara M., Hada K., Kozuma Y., Kimura M.
Biosci. Biotechnol. Biochem. 67:2574-2583(2003) [PubMed: 14730135] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Molecular cloning of cDNAs encoding ribonuclease-related proteins in Nicotiana glutinosa leaves, as induced in response to wounding or to TMV-infection."
Kurata N., Kariu T., Kawano S., Kimura M.
Biosci. Biotechnol. Biochem. 66:391-397(2002) [PubMed: 11999414] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates."
Kawano S., Kakuta Y., Kimura M.
Submitted (MAR-2004) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 24-236 IN COMPLEX WITH AMP.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AB032257 mRNA. Translation: BAA84469.1.
AB112026 Genomic DNA. Translation: BAC77611.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VCZX-ray1.80A24-236[»]
1VD1X-ray1.80A24-236[»]
1VD3X-ray1.80A24-236[»]
ProteinModelPortalQ9SSV1.
SMRQ9SSV1. Positions 24-227.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Enzyme and pathway databases

BRENDA3.1.27.1. 97458.

Family and domain databases

InterProIPR001568. RNase_T2.
IPR018188. RNase_T2_AS.
[Graphical view]
Gene3DG3DSA:3.90.730.10. RNase_T2. 1 hit.
PANTHERPTHR11240. RNase_T2. 1 hit.
PfamPF00445. Ribonuclease_T2. 1 hit.
[Graphical view]
SUPFAMSSF55895. RNase_T2. 1 hit.
PROSITEPS00530. RNASE_T2_1. 1 hit.
PS00531. RNASE_T2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9SSV1_NICGU
AccessionPrimary (citable) accession number: Q9SSV1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: October 19, 2011
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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