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Q9SSM2

- MDLL_ARATH

UniProt

Q9SSM2 - MDLL_ARATH

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Protein

(R)-mandelonitrile lyase-like

Gene

At1g73050

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

(R)-mandelonitrile = cyanide + benzaldehyde.

Cofactori

FAD.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei492 – 4921By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi55 – 8228FADBy similarityAdd
BLAST

GO - Molecular functioni

  1. choline dehydrogenase activity Source: InterPro
  2. flavin adenine dinucleotide binding Source: InterPro
  3. mandelonitrile lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. alcohol metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

FAD, Flavoprotein

Enzyme and pathway databases

BioCyciARA:AT1G73050-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
(R)-mandelonitrile lyase-like (EC:4.1.2.10)
Alternative name(s):
Hydroxynitrile lyase-like
Short name:
(R)-oxynitrilase-like
Gene namesi
Ordered Locus Names:At1g73050
ORF Names:F3N23.25
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G73050.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence AnalysisAdd
BLAST
Chaini29 – 552524(R)-mandelonitrile lyase-likePRO_0000412562Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi44 – 441N-linked (GlcNAc...)Sequence Analysis
Glycosylationi162 – 1621N-linked (GlcNAc...)Sequence Analysis
Glycosylationi259 – 2591N-linked (GlcNAc...)Sequence Analysis
Glycosylationi434 – 4341N-linked (GlcNAc...)Sequence Analysis

Post-translational modificationi

Glycosylated.By similarity

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiQ9SSM2.

Expressioni

Gene expression databases

GenevestigatoriQ9SSM2.

Interactioni

Subunit structurei

Monomer.By similarity

Protein-protein interaction databases

STRINGi3702.AT1G73050.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SSM2.
SMRiQ9SSM2. Positions 38-550.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GMC oxidoreductase family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG2303.
HOGENOMiHOG000239349.
InParanoidiQ9SSM2.
KOiK08248.
OMAiWVERAIV.
PhylomeDBiQ9SSM2.

Family and domain databases

InterProiIPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view]
PfamiPF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000137. Alcohol_oxidase. 1 hit.
PROSITEiPS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SSM2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTKRIDSSLL YTALVVLLLL GVVHRSNARP RVNRPPGFMR FISNATDFAS
60 70 80 90 100
EDYYDYIIVG GGTAGCPLAA TLSQSFRVLL LERGGVPYNR PNVMSHDGFL
110 120 130 140 150
TTLTDVNNFD SPAQSFISEE GVPNARGRVL GGSSAINAGF YSRADKQFFE
160 170 180 190 200
NSGLVWDLSS VNQSYEWVER AIVFRPQLRT WQTAIRDALL EVGVHPFNGF
210 220 230 240 250
TLEHKVGTKI GGSTFDRTGR RHSSADLLRY ARSSNIRVAV YATVERVLLA
260 270 280 290 300
SSPSVSGSNV SAIGVVYRDQ LGRFHHALIR DRGEVILSAG ALGSPQLLFL
310 320 330 340 350
SGIGPRSYLS TWGIPVALDQ PHVGDFVYDN PRNGISIVPP VPMENSLIQV
360 370 380 390 400
VGVTEDGAFL EAASNVIPFA SPLHSVFIRA PASPLYVPVT TIMEKILGPV
410 420 430 440 450
SIGLLRLAST DVRINPVVRF NYFSDPQDLE RCVNGTRKIG EILRSRAMQD
460 470 480 490 500
FMIREWFGNR RFRFVGAPLP VDQSNDLVMA DFCRRTVSTI WHYHGGAVVG
510 520 530 540 550
KVVDSDLKVI GVNSLRLVDG STFNISPGTN PQATLMMLGR YMGLKMLRER

MR
Length:552
Mass (Da):60,783
Last modified:May 1, 2000 - v1
Checksum:i7747A5D5C2DA7C7A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti257 – 2571G → R in ABE65766. (PubMed:17147637)Curated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC008017 Genomic DNA. Translation: AAD55652.1.
CP002684 Genomic DNA. Translation: AEE35408.1.
DQ446423 mRNA. Translation: ABE65766.1.
PIRiA96756.
RefSeqiNP_177448.1. NM_105963.1.
UniGeneiAt.52489.

Genome annotation databases

EnsemblPlantsiAT1G73050.1; AT1G73050.1; AT1G73050.
GeneIDi843636.
KEGGiath:AT1G73050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC008017 Genomic DNA. Translation: AAD55652.1 .
CP002684 Genomic DNA. Translation: AEE35408.1 .
DQ446423 mRNA. Translation: ABE65766.1 .
PIRi A96756.
RefSeqi NP_177448.1. NM_105963.1.
UniGenei At.52489.

3D structure databases

ProteinModelPortali Q9SSM2.
SMRi Q9SSM2. Positions 38-550.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT1G73050.1-P.

Proteomic databases

PRIDEi Q9SSM2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G73050.1 ; AT1G73050.1 ; AT1G73050 .
GeneIDi 843636.
KEGGi ath:AT1G73050.

Organism-specific databases

TAIRi AT1G73050.

Phylogenomic databases

eggNOGi COG2303.
HOGENOMi HOG000239349.
InParanoidi Q9SSM2.
KOi K08248.
OMAi WVERAIV.
PhylomeDBi Q9SSM2.

Enzyme and pathway databases

BioCyci ARA:AT1G73050-MONOMER.

Miscellaneous databases

PROi Q9SSM2.

Gene expression databases

Genevestigatori Q9SSM2.

Family and domain databases

InterProi IPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view ]
Pfami PF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000137. Alcohol_oxidase. 1 hit.
PROSITEi PS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
    Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
    Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiMDLL_ARATH
AccessioniPrimary (citable) accession number: Q9SSM2
Secondary accession number(s): Q1PFE0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 21, 2011
Last sequence update: May 1, 2000
Last modified: October 1, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3