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Protein

Zinc finger protein CONSTANS-LIKE 9

Gene

COL9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 47B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST43
Zinc fingeri48 – 99B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST52

GO - Molecular functioni

  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • zinc ion binding Source: InterPro

GO - Biological processi

  • circadian rhythm Source: TAIR
  • negative regulation of long-day photoperiodism, flowering Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein CONSTANS-LIKE 9
Gene namesi
Name:COL9
Ordered Locus Names:At3g07650
ORF Names:MLP3.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G07650.
TAIRilocus:2091082. AT3G07650.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001132861 – 372Zinc finger protein CONSTANS-LIKE 9Add BLAST372

Proteomic databases

PaxDbiQ9SSE5.

PTM databases

iPTMnetiQ9SSE5.

Expressioni

Gene expression databases

ExpressionAtlasiQ9SSE5. baseline and differential.
GenevisibleiQ9SSE5. AT.

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

IntActiQ9SSE5. 6 interactors.
STRINGi3702.AT3G07650.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SSE5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini315 – 357CCTPROSITE-ProRule annotationAdd BLAST43

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi77 – 83Poly-Asn7
Compositional biasi84 – 90Poly-Ser7

Sequence similaritiesi

Belongs to the CONSTANS family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 47B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST43
Zinc fingeri48 – 99B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST52

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IHQ3. Eukaryota.
ENOG410YA5C. LUCA.
HOGENOMiHOG000116529.
InParanoidiQ9SSE5.
OMAiMILMGEP.
OrthoDBiEOG09360F07.
PhylomeDBiQ9SSE5.

Family and domain databases

CDDicd00021. BBOX. 2 hits.
InterProiView protein in InterPro
IPR010402. CCT_domain.
IPR000315. Znf_B-box.
PfamiView protein in Pfam
PF06203. CCT. 1 hit.
SMARTiView protein in SMART
SM00336. BBOX. 2 hits.
PROSITEiView protein in PROSITE
PS51017. CCT. 1 hit.
PS50119. ZF_BBOX. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9SSE5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER
60 70 80 90 100
CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
110 120 130 140 150
CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED
160 170 180 190 200
KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
210 220 230 240 250
YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS
260 270 280 290 300
KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
310 320 330 340 350
PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV
360 370
KGRFVKAGEA YDYDPLTPTR SY
Length:372
Mass (Da):40,754
Last modified:May 1, 2000 - v1
Checksum:i188F18EB283D7479
GO

Sequence cautioni

The sequence AAK83632 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009176 Genomic DNA. Translation: AAF13083.1.
CP002686 Genomic DNA. Translation: AEE74580.1.
CP002686 Genomic DNA. Translation: AEE74581.1.
CP002686 Genomic DNA. Translation: AEE74582.1.
CP002686 Genomic DNA. Translation: AEE74583.1.
AY049290 mRNA. Translation: AAK83632.1. Different initiation.
RefSeqiNP_001030659.1. NM_001035582.1.
NP_001118599.1. NM_001125127.2.
NP_187422.1. NM_111644.5.
NP_974250.1. NM_202521.2.
UniGeneiAt.18337.

Genome annotation databases

EnsemblPlantsiAT3G07650.1; AT3G07650.1; AT3G07650.
AT3G07650.2; AT3G07650.2; AT3G07650.
AT3G07650.3; AT3G07650.3; AT3G07650.
AT3G07650.4; AT3G07650.4; AT3G07650.
GeneIDi819956.
GrameneiAT3G07650.1; AT3G07650.1; AT3G07650.
AT3G07650.2; AT3G07650.2; AT3G07650.
AT3G07650.3; AT3G07650.3; AT3G07650.
AT3G07650.4; AT3G07650.4; AT3G07650.
KEGGiath:AT3G07650.

Similar proteinsi

Entry informationi

Entry nameiCOL9_ARATH
AccessioniPrimary (citable) accession number: Q9SSE5
Secondary accession number(s): Q94A77
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 5, 2001
Last sequence update: May 1, 2000
Last modified: October 25, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families