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Q9SSC6 (Q9SSC6_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative uncharacterized protein At1g80130 EMBL AAK59496.1

Tetratricopeptide repeat domain-containing protein EMBL AEE36360.1
Gene names
Name:F18B13.21 EMBL AAD55471.1
Ordered Locus Names:At1g80130 TAIR AT1G80130 EMBL AEE36360.1
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length305 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processresponse to oxidative stress

Inferred from mutant phenotype PubMed 18614705. Source: TAIR

   Cellular_componentmembrane

Inferred from direct assay PubMed 17432890. Source: TAIR

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9SSC6 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 6C19DDCC6646A715

FASTA30533,595
        10         20         30         40         50         60 
MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD 

        70         80         90        100        110        120 
NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD RSSPFLVERL FSSSGQGDKA 

       130        140        150        160        170        180 
SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS 

       190        200        210        220        230        240 
LLTGNYAKFL KEVKGDMKKA EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK 

       250        260        270        280        290        300 
QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS 


ITASS 

« Hide

References

« Hide 'large scale' references
[1]Federspiel N.A., Palm C.J., Conway A.B., Conn L., Hansen N.F., Altafi H., Araujo R., Huizar L., Rowley D., Buehler E., Dunn P., Gonzalez A., Kremenetskaia I., Kim C., Lenz C., Li J., Liu S., Luros S. expand/collapse author list , Schwartz J., Shinn P., Toriumi M., Vysotskaia V.S., Walker M., Yu G., Ecker J., Theologis A., Davis R.W.
Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]"Arabidopsis Full Length cDNA Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T. expand/collapse author list , Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (MAY-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J. expand/collapse author list , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Full-length messenger RNA sequences greatly improve genome annotation."
Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[6]Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]"Features of Arabidopsis genes and genome discovered using full-length cDNAs."
Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
Plant Mol. Biol. 60:71-87(2006)
Cited for: NUCLEOTIDE SEQUENCE.
[8]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC009322 Genomic DNA. Translation: AAD55471.1.
AY034991 mRNA. Translation: AAK59496.1.
AY063018 mRNA. Translation: AAL34192.1.
AY087456 mRNA. Translation: AAM65002.1.
CP002684 Genomic DNA. Translation: AEE36360.1.
PIRH96832.
RefSeqNP_565230.1. NM_106662.4.
UniGeneAt.23459.

3D structure databases

ProteinModelPortalQ9SSC6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3702.AT1G80130.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G80130.1; AT1G80130.1; AT1G80130.
GeneID844353.
KEGGath:AT1G80130.

Organism-specific databases

TAIRAT1G80130.

Phylogenomic databases

eggNOGNOG245836.
HOGENOMHOG000029161.
InParanoidQ9SSC6.
OMACERAILG.
PhylomeDBQ9SSC6.

Gene expression databases

GenevestigatorQ9SSC6.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
InterProIPR011990. TPR-like_helical.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9SSC6_ARATH
AccessionPrimary (citable) accession number: Q9SSC6
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)