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Q9SSC6

- Q9SSC6_ARATH

UniProt

Q9SSC6 - Q9SSC6_ARATH

Protein
Submitted name:

F18B13.21 protein

Gene

F18B13.21

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. response to oxidative stress Source: TAIR

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    F18B13.21 proteinImported
    Submitted name:
    Putative uncharacterized protein At1g80130Imported
    Submitted name:
    Tetratricopeptide repeat domain-containing proteinImported
    Gene namesi
    Name:F18B13.21Imported
    Ordered Locus Names:At1g80130Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G80130.

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: TAIR

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SSC6.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT1G80130.1-P.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG245836.
    HOGENOMiHOG000029161.
    InParanoidiQ9SSC6.
    OMAiCERAILG.
    PhylomeDBiQ9SSC6.

    Family and domain databases

    Gene3Di1.25.40.10. 1 hit.
    InterProiIPR011990. TPR-like_helical.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9SSC6-1 [UniParc]FASTAAdd to Basket

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    MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT    50
    GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD 100
    RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG 150
    VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA 200
    EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC 250
    YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS 300
    ITASS 305
    Length:305
    Mass (Da):33,595
    Last modified:May 1, 2000 - v1
    Checksum:i6C19DDCC6646A715
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC009322 Genomic DNA. Translation: AAD55471.1.
    AY034991 mRNA. Translation: AAK59496.1.
    AY063018 mRNA. Translation: AAL34192.1.
    AY087456 mRNA. Translation: AAM65002.1.
    CP002684 Genomic DNA. Translation: AEE36360.1.
    PIRiH96832.
    RefSeqiNP_565230.1. NM_106662.4.
    UniGeneiAt.23459.

    Genome annotation databases

    EnsemblPlantsiAT1G80130.1; AT1G80130.1; AT1G80130.
    GeneIDi844353.
    KEGGiath:AT1G80130.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC009322 Genomic DNA. Translation: AAD55471.1 .
    AY034991 mRNA. Translation: AAK59496.1 .
    AY063018 mRNA. Translation: AAL34192.1 .
    AY087456 mRNA. Translation: AAM65002.1 .
    CP002684 Genomic DNA. Translation: AEE36360.1 .
    PIRi H96832.
    RefSeqi NP_565230.1. NM_106662.4.
    UniGenei At.23459.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT1G80130.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G80130.1 ; AT1G80130.1 ; AT1G80130 .
    GeneIDi 844353.
    KEGGi ath:AT1G80130.

    Organism-specific databases

    TAIRi AT1G80130.

    Phylogenomic databases

    eggNOGi NOG245836.
    HOGENOMi HOG000029161.
    InParanoidi Q9SSC6.
    OMAi CERAILG.
    PhylomeDBi Q9SSC6.

    Gene expression databases

    Genevestigatori Q9SSC6.

    Family and domain databases

    Gene3Di 1.25.40.10. 1 hit.
    InterProi IPR011990. TPR-like_helical.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
    2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
    4. "Arabidopsis Open Reading Frame (ORF) Clones."
      Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
      , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
      Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    5. "Full-length messenger RNA sequences greatly improve genome annotation."
      Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
      Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    6. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
      Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
      Plant Mol. Biol. 60:71-87(2006)
      Cited for: NUCLEOTIDE SEQUENCE.
    8. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ9SSC6_ARATH
    AccessioniPrimary (citable) accession number: Q9SSC6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3