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Q9SSC6

- Q9SSC6_ARATH

UniProt

Q9SSC6 - Q9SSC6_ARATH

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Protein
Submitted name:

F18B13.21 protein

Gene

F18B13.21

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. response to oxidative stress Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
F18B13.21 proteinImported
Submitted name:
Putative uncharacterized protein At1g80130Imported
Submitted name:
Tetratricopeptide repeat domain-containing proteinImported
Gene namesi
Name:F18B13.21Imported
Ordered Locus Names:At1g80130Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G80130.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: TAIR
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9SSC6.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G80130.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SSC6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG245836.
HOGENOMiHOG000029161.
InParanoidiQ9SSC6.
OMAiCERAILG.
PhylomeDBiQ9SSC6.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR011990. TPR-like_helical_dom.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SSC6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT
60 70 80 90 100
GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
110 120 130 140 150
RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG
160 170 180 190 200
VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
210 220 230 240 250
EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC
260 270 280 290 300
YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS

ITASS
Length:305
Mass (Da):33,595
Last modified:May 1, 2000 - v1
Checksum:i6C19DDCC6646A715
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC009322 Genomic DNA. Translation: AAD55471.1.
AY034991 mRNA. Translation: AAK59496.1.
AY063018 mRNA. Translation: AAL34192.1.
AY087456 mRNA. Translation: AAM65002.1.
CP002684 Genomic DNA. Translation: AEE36360.1.
PIRiH96832.
RefSeqiNP_565230.1. NM_106662.4.
UniGeneiAt.23459.

Genome annotation databases

EnsemblPlantsiAT1G80130.1; AT1G80130.1; AT1G80130.
GeneIDi844353.
KEGGiath:AT1G80130.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC009322 Genomic DNA. Translation: AAD55471.1 .
AY034991 mRNA. Translation: AAK59496.1 .
AY063018 mRNA. Translation: AAL34192.1 .
AY087456 mRNA. Translation: AAM65002.1 .
CP002684 Genomic DNA. Translation: AEE36360.1 .
PIRi H96832.
RefSeqi NP_565230.1. NM_106662.4.
UniGenei At.23459.

3D structure databases

ProteinModelPortali Q9SSC6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT1G80130.1-P.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G80130.1 ; AT1G80130.1 ; AT1G80130 .
GeneIDi 844353.
KEGGi ath:AT1G80130.

Organism-specific databases

TAIRi AT1G80130.

Phylogenomic databases

eggNOGi NOG245836.
HOGENOMi HOG000029161.
InParanoidi Q9SSC6.
OMAi CERAILG.
PhylomeDBi Q9SSC6.

Gene expression databases

Genevestigatori Q9SSC6.

Family and domain databases

Gene3Di 1.25.40.10. 1 hit.
InterProi IPR011990. TPR-like_helical_dom.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. "Arabidopsis Open Reading Frame (ORF) Clones."
    Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
    , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
    Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Full-length messenger RNA sequences greatly improve genome annotation."
    Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
    Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  6. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
    Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
    Plant Mol. Biol. 60:71-87(2006)
    Cited for: NUCLEOTIDE SEQUENCE.
  8. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9SSC6_ARATH
AccessioniPrimary (citable) accession number: Q9SSC6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3