Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q9SS93 (Q9SS93_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Beta-1,4-mannosyl-glycoprotein EMBL AEE73696.1
Submitted name:
F4P13.16 protein EMBL AAF01546.1
Submitted name:
Putative uncharacterized protein At3g01620 EMBL AAO22787.1
Gene names
Name:F4P13.16 EMBL AAF01546.1
Ordered Locus Names:At3g01620 TAIR At3g01620
ORF Names:AT3G01620 EMBL AEE73696.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL AAF01546.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9SS93 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 6E3D0ACDBA16EDEE

FASTA38845,319
        10         20         30         40         50         60 
MSDGYRSSKK TDTICEDVCG QEGSRAGKAI SRLRCVLRGL DFKTFLFLFT LLPLFIFGIY 

        70         80         90        100        110        120 
LHGQKITYFL RPLWESPPKP FNILPHYYHE NTSMELLCNL HGWKLRESPR RVFDAALFSN 

       130        140        150        160        170        180 
EIDMLTLRWN ELNPYITQFV LLESNSTFTG LSKQLAFADN REKNFKFVEP RLTYGNVGGR 

       190        200        210        220        230        240 
FKKGENPFVE ESFQRLALDQ LIKLAGIKED DLLIMSDVDE IPSGHTINLL RWCDGFPPIL 

       250        260        270        280        290        300 
HLQLRNYLYS YEYYVDSKSW RASVHLYKPG KTRCAHFRQS NNLLTDSGWH CSFCFRHIND 

       310        320        330        340        350        360 
FVFKMKAYSH TDRVRFLHYL NPRRIQDIIC KGTDLFDMLP EEHTFREIIG KLGPIPRSYS 

       370        380 
AVHLPGYLIQ NADSYKYLLP GNCKRESG

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed: 11130713] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Arabidopsis Full Length cDNA Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y. expand/collapse author list , Ishida J., Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y. expand/collapse author list , Ishida J., Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]Arabidopsis TAIR10 Release
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[6]"Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence."
Lin X., Kaul S., Town C.D., Benito M.-I., Creasy T.H., Haas B., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC009325 Genomic DNA. Translation: AAF01546.1.
BT002978 mRNA. Translation: AAO22787.1.
BT004421 mRNA. Translation: AAO42415.1.
CP002686 Genomic DNA. Translation: AEE73696.1.
IPIIPI00519285.
RefSeqNP_186811.1. NM_111028.2.
UniGeneAt.27731.
At.63552.

3D structure databases

ModBaseSearch...

Protein family/group databases

CAZyGT17. Glycosyltransferase Family 17.

Proteomic databases

PRIDEQ9SS93.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G01620.1; AT3G01620.1; AT3G01620.
GeneID821102.
GenomeReviewsGene locus AT3G01620 in contig BA000014_GR.
KEGGath:AT3G01620.
NMPDRfig|3702.1.peg.12090.

Organism-specific databases

TAIRAt3g01620.

Phylogenomic databases

eggNOGeuNOG05196.
GeneTreeEPGT00050000017473.
HOGENOMHBG317367.
InParanoidQ9SS93.
OMAKTDTICE.
PhylomeDBQ9SS93.
ProtClustDBCLSN2682029.

Gene expression databases

ArrayExpressQ9SS93.
GenevestigatorQ9SS93.

Family and domain databases

InterProIPR006813. Glyco_trans_17.
[Graphical view]
KOK00737.
PANTHERPTHR12224. Glyco_trans_17. 1 hit.
PfamPF04724. Glyco_transf_17. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9SS93_ARATH
AccessionPrimary (citable) accession number: Q9SS93
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info