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Protein

40S ribosomal protein S24-1

Gene

RPS24A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: GO_Central
  • mature ribosome assembly Source: CAFA
  • ribosome assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S24-1
Gene namesi
Name:RPS24A
Ordered Locus Names:At3g04920
ORF Names:T9J14.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G04920.
TAIRilocus:2114830. AT3G04920.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • plasma membrane Source: TAIR
  • polysomal ribosome Source: CAFA
  • vacuolar membrane Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001376321 – 13340S ribosomal protein S24-1Add BLAST133

Proteomic databases

PaxDbiQ9SS17.
PRIDEiQ9SS17.

Expressioni

Gene expression databases

ExpressionAtlasiQ9SS17. baseline and differential.
GenevisibleiQ9SS17. AT.

Interactioni

Protein-protein interaction databases

BioGridi4987. 12 interactors.
IntActiQ9SS17. 11 interactors.
STRINGi3702.AT3G04920.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SS17.
SMRiQ9SS17.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3424. Eukaryota.
COG2004. LUCA.
HOGENOMiHOG000186306.
InParanoidiQ9SS17.
KOiK02974.
OMAiTHFGGGR.
OrthoDBiEOG09360SSC.
PhylomeDBiQ9SS17.

Family and domain databases

HAMAPiMF_00545. Ribosomal_S24e. 1 hit.
InterProiView protein in InterPro
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001976. Ribosomal_S24e.
IPR018098. Ribosomal_S24e_CS.
PANTHERiPTHR10496. PTHR10496. 1 hit.
PfamiView protein in Pfam
PF01282. Ribosomal_S24e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD006052. Ribosomal_S24e. 1 hit.
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiView protein in PROSITE
PS00529. RIBOSOMAL_S24E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9SS17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE
60 70 80 90 100
VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
110 120 130
KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK
Length:133
Mass (Da):15,372
Last modified:May 1, 2000 - v1
Checksum:i6C72871D19B194AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009465 Genomic DNA. Translation: AAG51413.1.
CP002686 Genomic DNA. Translation: AEE74158.1.
AY050364 mRNA. Translation: AAK91381.1.
AY062671 mRNA. Translation: AAL32749.1.
AY093332 mRNA. Translation: AAM13331.1.
AY094044 mRNA. Translation: AAM16200.1.
AY086479 mRNA. Translation: AAM63481.1.
RefSeqiNP_187143.1. NM_111364.3.
UniGeneiAt.19916.
At.20505.

Genome annotation databases

EnsemblPlantsiAT3G04920.1; AT3G04920.1; AT3G04920.
GeneIDi819652.
GrameneiAT3G04920.1; AT3G04920.1; AT3G04920.
KEGGiath:AT3G04920.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS241_ARATH
AccessioniPrimary (citable) accession number: Q9SS17
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: June 7, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families