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Protein

40S ribosomal protein S24-1

Gene

RPS24A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S24-1
Gene namesi
Name:RPS24A
Ordered Locus Names:At3g04920
ORF Names:T9J14.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G04920
TAIRilocus:2114830 AT3G04920

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001376321 – 13340S ribosomal protein S24-1Add BLAST133

Proteomic databases

PaxDbiQ9SS17
PRIDEiQ9SS17

Expressioni

Gene expression databases

ExpressionAtlasiQ9SS17 baseline and differential
GenevisibleiQ9SS17 AT

Interactioni

Protein-protein interaction databases

BioGridi4987, 12 interactors
IntActiQ9SS17, 11 interactors
STRINGi3702.AT3G04920.1

Structurei

3D structure databases

ProteinModelPortaliQ9SS17
SMRiQ9SS17
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3424 Eukaryota
COG2004 LUCA
HOGENOMiHOG000186306
InParanoidiQ9SS17
KOiK02974
OMAiIALCCEC
OrthoDBiEOG09360SSC
PhylomeDBiQ9SS17

Family and domain databases

HAMAPiMF_00545 Ribosomal_S24e, 1 hit
InterProiView protein in InterPro
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001976 Ribosomal_S24e
IPR018098 Ribosomal_S24e_CS
PANTHERiPTHR10496 PTHR10496, 1 hit
PfamiView protein in Pfam
PF01282 Ribosomal_S24e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD006052 Ribosomal_S24e, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
PROSITEiView protein in PROSITE
PS00529 RIBOSOMAL_S24E, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SS17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE
60 70 80 90 100
VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
110 120 130
KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK
Length:133
Mass (Da):15,372
Last modified:May 1, 2000 - v1
Checksum:i6C72871D19B194AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009465 Genomic DNA Translation: AAG51413.1
CP002686 Genomic DNA Translation: AEE74158.1
AY050364 mRNA Translation: AAK91381.1
AY062671 mRNA Translation: AAL32749.1
AY093332 mRNA Translation: AAM13331.1
AY094044 mRNA Translation: AAM16200.1
AY086479 mRNA Translation: AAM63481.1
RefSeqiNP_187143.1, NM_111364.3
UniGeneiAt.19916
At.20505

Genome annotation databases

EnsemblPlantsiAT3G04920.1; AT3G04920.1; AT3G04920
GeneIDi819652
GrameneiAT3G04920.1; AT3G04920.1; AT3G04920
KEGGiath:AT3G04920

Similar proteinsi

Entry informationi

Entry nameiRS241_ARATH
AccessioniPrimary (citable) accession number: Q9SS17
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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