Unreviewed, UniProtKB/TrEMBL Q9SRZ6 (Q9SRZ6_ARATH)

Names and origin

Protein names

Submitted name:
    At1g65930/F12P19_10 EMBL AAM19856.1
Submitted name:
    F12P19.10 protein EMBL AAF06054.1
    Isocitrate dehydrogenase, putative EMBL AAO00760.1

Gene names

Ordered Locus Names:	At1g65930 TAIR At1g65930
ORF Names:	F12P19.10

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	410 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443V0

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004444V0
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	isocitrate metabolic process Inferred from electronic annotation. Source: InterPro response to cadmium ion Inferred from expression pattern. Source: TAIR response to salt stress Inferred from expression pattern. Source: TAIR
Cellular component	apoplast Inferred from direct assay. Source: TAIR plasma membrane Inferred from direct assay. Source: TAIR
Molecular function	copper ion binding Inferred from direct assay. Source: TAIR isocitrate dehydrogenase (NADP+) activity Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9SRZ6-1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 6CC3CA11AB631D28	FASTA	410	45,746
	10 20 30 40 50 60 MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI 70 80 90 100 110 120 ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT IRNILNGTVF REPIICKNVP 130 140 150 160 170 180 KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM 190 200 210 220 230 240 AMYNTDESIR AFADASMNTA YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD 250 260 270 280 290 300 AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG 310 320 330 340 350 360 KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE 370 380 390 400 410 AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV AAELKERLNA

References

[1]	"Arabidopsis thaliana chromosome 1 BAC F12P19 sequence." Schwartz J.R., Yu G., Toriumi M., Lenz C., Liu S., Lee J.M., Li J., Gonzalez A., Liu A., Liu K., Sakano H., Vaysberg M., Chin C., Choi E., Chiou J., Altafi H., Araujo R., Brooks S. , Buehler E., Chao Q., Conn L., Conway A., Dunn P., Hansen N., Howng B., Huizar L., Johnson-Hopson C., Khan S., Kim C., Lam B., Nguyen M., Palm C., Rowley D., Shinn P., Southwick A., Tambunga G., Walker M., Davis R.W., Ecker J.R., Federspiel N.A., Theologis A. Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P., Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M., Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A. , Kawai J., Kim C.J., Narusaka M., Onodera C.S., Quach H.L., Sakurai T., Satou M., Seki M., Shinn P., Tang C.C., Toroumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W. Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Meyers M.C., Shinn P., Banh J., Bowser L., Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B. , Lee J.M., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis cDNA clones." Kim C.J., Chen H., Cheuk R., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Gibson H.A., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J. , Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Arabidopsis cDNA clones." Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B. , Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC009513 Genomic DNA. Translation: AAF06054.1. AY045631 mRNA. Translation: AAK73989.1. AF419575 mRNA. Translation: AAL31907.1. AY097340 mRNA. Translation: AAM19856.1. BT002400 mRNA. Translation: AAO00760.1.
IPI	IPI00539206.
PIR	F96683.
RefSeq	NP_176768.1.
UniGene	At.24713
3D structure databases
HSSP	HSSP built from PDB template 1LWD based on UniProtKB P33198.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9SRZ6. 1 interaction.
Proteomic databases
PRIDE	Q9SRZ6.
Genome annotation databases
GeneID	842905.
KEGG	ath:AT1G65930.
NMPDR	fig|3702.1.peg.6015.
Organism-specific databases
TAIR	At1g65930.
Phylogenomic databases
OMA	Q9SRZ6. PRIPRIV.
Family and domain databases
InterPro	IPR019818. IsoCit/isopropylmalate_DH_CS. IPR001804. Isocitrate/isopropylmalate_DH. IPR004790. Isocitrate_DH_NADP-dep_euk. [Graphical view]
Gene3D	G3DSA:3.40.718.10. IDH_IMDH. 1 hit.
PANTHER	PTHR11822. IDH_NADP_euk. 1 hit.
Pfam	PF00180. Iso_dh. 1 hit. [Graphical view]
PIRSF	PIRSF000108. IDH_NADP. 1 hit.
TIGRFAMs	TIGR00127. nadp_idh_euk. 1 hit.
PROSITE	PS00470. IDH_IMDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9SRZ6_ARATH

Accession

Primary (citable) accession number: Q9SRZ6

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	June 16, 2009
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)