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Protein

60S ribosomal protein L19-1

Gene

RPL19A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L19-1
Alternative name(s):
Protein EMBRYO DEFECTIVE 2386
Gene namesi
Name:RPL19A
Synonyms:EMB2386
Ordered Locus Names:At1g02780
ORF Names:F22D16.23
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G02780
TAIRilocus:2024695 AT1G02780

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311791 – 21460S ribosomal protein L19-1Add BLAST214

Proteomic databases

PaxDbiQ9SRX2
PRIDEiQ9SRX2

PTM databases

iPTMnetiQ9SRX2

Expressioni

Gene expression databases

ExpressionAtlasiQ9SRX2 baseline and differential
GenevisibleiQ9SRX2 AT

Interactioni

Protein-protein interaction databases

BioGridi24642, 8 interactors
IntActiQ9SRX2, 5 interactors
STRINGi3702.AT1G02780.1

Structurei

3D structure databases

ProteinModelPortaliQ9SRX2
SMRiQ9SRX2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1696 Eukaryota
COG2147 LUCA
HOGENOMiHOG000231277
InParanoidiQ9SRX2
KOiK02885
OMAiNICIMTS
OrthoDBiEOG09360OFN
PhylomeDBiQ9SRX2

Family and domain databases

CDDicd01417 Ribosomal_L19e_E, 1 hit
Gene3Di1.10.1650.10, 1 hit
HAMAPiMF_01475 Ribosomal_L19e, 1 hit
InterProiView protein in InterPro
IPR035970 60S_ribosomal_L19/L19e_sf
IPR000196 Ribosomal_L19/L19e
IPR023638 Ribosomal_L19/L19e_CS
IPR015972 Ribosomal_L19/L19e_dom1
IPR033935 Ribosomal_L19_euka
PfamiView protein in Pfam
PF01280 Ribosomal_L19e, 1 hit
SMARTiView protein in SMART
SM01416 Ribosomal_L19e, 1 hit
SUPFAMiSSF48140 SSF48140, 1 hit
PROSITEiView protein in PROSITE
PS00526 RIBOSOMAL_L19E, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SRX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI
60 70 80 90 100
IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
110 120 130 140 150
VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA
160 170 180 190 200
REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
210
PAPTAAVPKK KSKK
Length:214
Mass (Da):24,606
Last modified:May 1, 2000 - v1
Checksum:i6FB776ED5B0AA7DC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti120 – 122YHD → SMT in CAA79170 (PubMed:8281187).Curated3
Sequence conflicti126R → S in CAA79170 (PubMed:8281187).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009525 Genomic DNA Translation: AAF02889.1
CP002684 Genomic DNA Translation: AEE27469.1
AF424580 mRNA Translation: AAL11574.1
BT010178 mRNA Translation: AAQ22647.1
Z18373 mRNA Translation: CAA79170.1
PIRiG86157
RefSeqiNP_171777.1, NM_100157.4
UniGeneiAt.24204

Genome annotation databases

EnsemblPlantsiAT1G02780.1; AT1G02780.1; AT1G02780
GeneIDi839407
GrameneiAT1G02780.1; AT1G02780.1; AT1G02780
KEGGiath:AT1G02780

Similar proteinsi

Entry informationi

Entry nameiRL191_ARATH
AccessioniPrimary (citable) accession number: Q9SRX2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
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