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Protein

60S ribosomal protein L19-1

Gene

RPL19A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L19-1
Alternative name(s):
Protein EMBRYO DEFECTIVE 2386
Gene namesi
Name:RPL19A
Synonyms:EMB2386
Ordered Locus Names:At1g02780
ORF Names:F22D16.23
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G02780.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21421460S ribosomal protein L19-1PRO_0000131179Add
BLAST

Proteomic databases

PaxDbiQ9SRX2.
PRIDEiQ9SRX2.

PTM databases

iPTMnetiQ9SRX2.

Expressioni

Gene expression databases

GenevisibleiQ9SRX2. AT.

Interactioni

Protein-protein interaction databases

BioGridi24642. 8 interactions.
IntActiQ9SRX2. 5 interactions.
STRINGi3702.AT1G02780.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SRX2.
SMRiQ9SRX2. Positions 1-132.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L19e family.Curated

Phylogenomic databases

eggNOGiKOG1696. Eukaryota.
COG2147. LUCA.
HOGENOMiHOG000231277.
InParanoidiQ9SRX2.
KOiK02885.
OMAiKMKIAKM.
OrthoDBiEOG09360OFN.
PhylomeDBiQ9SRX2.

Family and domain databases

Gene3Di1.10.1200.60. 1 hit.
1.10.1650.10. 1 hit.
HAMAPiMF_01475. Ribosomal_L19e. 1 hit.
InterProiIPR027547. Ribosomal_L19/L19e.
IPR023638. Ribosomal_L19/L19e_CS.
IPR000196. Ribosomal_L19/L19e_dom.
IPR015972. Ribosomal_L19/L19e_dom1.
IPR015974. Ribosomal_L19/L19e_dom3.
[Graphical view]
PfamiPF01280. Ribosomal_L19e. 1 hit.
[Graphical view]
SMARTiSM01416. Ribosomal_L19e. 1 hit.
[Graphical view]
SUPFAMiSSF48140. SSF48140. 1 hit.
PROSITEiPS00526. RIBOSOMAL_L19E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SRX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI
60 70 80 90 100
IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
110 120 130 140 150
VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA
160 170 180 190 200
REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
210
PAPTAAVPKK KSKK
Length:214
Mass (Da):24,606
Last modified:May 1, 2000 - v1
Checksum:i6FB776ED5B0AA7DC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti120 – 1223YHD → SMT in CAA79170 (PubMed:8281187).Curated
Sequence conflicti126 – 1261R → S in CAA79170 (PubMed:8281187).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009525 Genomic DNA. Translation: AAF02889.1.
CP002684 Genomic DNA. Translation: AEE27469.1.
AF424580 mRNA. Translation: AAL11574.1.
BT010178 mRNA. Translation: AAQ22647.1.
Z18373 mRNA. Translation: CAA79170.1.
PIRiG86157.
RefSeqiNP_171777.1. NM_100157.3.
UniGeneiAt.24204.

Genome annotation databases

EnsemblPlantsiAT1G02780.1; AT1G02780.1; AT1G02780.
GeneIDi839407.
GrameneiAT1G02780.1; AT1G02780.1; AT1G02780.
KEGGiath:AT1G02780.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009525 Genomic DNA. Translation: AAF02889.1.
CP002684 Genomic DNA. Translation: AEE27469.1.
AF424580 mRNA. Translation: AAL11574.1.
BT010178 mRNA. Translation: AAQ22647.1.
Z18373 mRNA. Translation: CAA79170.1.
PIRiG86157.
RefSeqiNP_171777.1. NM_100157.3.
UniGeneiAt.24204.

3D structure databases

ProteinModelPortaliQ9SRX2.
SMRiQ9SRX2. Positions 1-132.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24642. 8 interactions.
IntActiQ9SRX2. 5 interactions.
STRINGi3702.AT1G02780.1.

PTM databases

iPTMnetiQ9SRX2.

Proteomic databases

PaxDbiQ9SRX2.
PRIDEiQ9SRX2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G02780.1; AT1G02780.1; AT1G02780.
GeneIDi839407.
GrameneiAT1G02780.1; AT1G02780.1; AT1G02780.
KEGGiath:AT1G02780.

Organism-specific databases

TAIRiAT1G02780.

Phylogenomic databases

eggNOGiKOG1696. Eukaryota.
COG2147. LUCA.
HOGENOMiHOG000231277.
InParanoidiQ9SRX2.
KOiK02885.
OMAiKMKIAKM.
OrthoDBiEOG09360OFN.
PhylomeDBiQ9SRX2.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ9SRX2.

Gene expression databases

GenevisibleiQ9SRX2. AT.

Family and domain databases

Gene3Di1.10.1200.60. 1 hit.
1.10.1650.10. 1 hit.
HAMAPiMF_01475. Ribosomal_L19e. 1 hit.
InterProiIPR027547. Ribosomal_L19/L19e.
IPR023638. Ribosomal_L19/L19e_CS.
IPR000196. Ribosomal_L19/L19e_dom.
IPR015972. Ribosomal_L19/L19e_dom1.
IPR015974. Ribosomal_L19/L19e_dom3.
[Graphical view]
PfamiPF01280. Ribosomal_L19e. 1 hit.
[Graphical view]
SMARTiSM01416. Ribosomal_L19e. 1 hit.
[Graphical view]
SUPFAMiSSF48140. SSF48140. 1 hit.
PROSITEiPS00526. RIBOSOMAL_L19E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL191_ARATH
AccessioniPrimary (citable) accession number: Q9SRX2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.